Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32184
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z54236-6|CAA90981.3|  465|Caenorhabditis elegans Hypothetical
           protein C27B7.6 protein.
          Length = 465

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +3

Query: 231 CSTYFVP-VIRTYVLRHNYVLNFYLFKVCGHSVENNSKTLTL 353
           C+T  +  +IR + ++  YV + YL  + GH+ E +++ LT+
Sbjct: 240 CTTLAIDLIIRAHEMKEVYVFHLYLSSMKGHTFEFDNRLLTV 281


>Z83744-4|CAB06040.4|  735|Caenorhabditis elegans Hypothetical
           protein C06A12.4 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = +3

Query: 429 RCYTKETWTNLTCPFILLMCRFSKILHASDVQICRRTTY 545
           RC+T   W      +I   C  + IL+   + + R TT+
Sbjct: 74  RCFTIVAWCGWCSNYIFFPCLMNAILYIISLSLSRDTTF 112


>U50312-11|AAK71353.2| 1217|Caenorhabditis elegans Hypothetical
            protein B0222.9 protein.
          Length = 1217

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 288  LNFYLFKVCGHSVENNSKTLTLVYYTTPRI-NVTEFGKSKNIITSQL 425
            LN  + +VC  +++    T+T+V  +T ++ N  E G S+N  T+ L
Sbjct: 951  LNQKMLQVCSEALKRPIDTITIVDCSTDKVTNAPETGGSQNADTNGL 997


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
            protein F15E6.6 protein.
          Length = 1228

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +3

Query: 288  LNFYLFKVCGHSVENNSKTLTLVYYTTPRI-NVTEFGKSKNIITSQL 425
            LN  + +VC  +++    T+T+V  +T +I N  E G S N  T+ L
Sbjct: 961  LNQKMLQVCSEALKRPIDTITIVDCSTDKITNAPETGASHNADTNGL 1007


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,729,663
Number of Sequences: 27780
Number of extensions: 365072
Number of successful extensions: 799
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)