Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32181
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2 ...    32   0.048
SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomy...    27   2.4  
SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol 3-phosphatidyltra...    25   7.3  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.3  

>SPCC24B10.08c |||histone acetyltransferase complex subunit Ada2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 437

 Score = 32.3 bits (70), Expect = 0.048
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 46  HKRDLNFCLISSYSE*LPMQYPQGQTLLNHNFLDKRRL 159
           H+  L   +++ Y+  L  +  + QT+ NHN LD RRL
Sbjct: 200 HEMQLKLTMLNIYNSRLTRRAVRKQTIFNHNLLDYRRL 237


>SPBC3D6.12 |||U3 snoRNA associted protein Dip2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 922

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 422 DSFLNLDTERRRKFMNFYSRVIFDVTTSYNSMEPDGRTKKHDSCGVT 282
           D  + L+ ER R+    Y   +    +SY + E DG  K  D   VT
Sbjct: 689 DDLVFLEEERERELEEQYESTL---VSSYENAEADGEVKDGDVAAVT 732


>SPAC1D4.08 |pis1||CDP-diacylglycerol--inositol
           3-phosphatidyltransferase Pis1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 251

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +2

Query: 299 HVFSCVHPAPSNYKTLSRQK----LLYYKSS*IFFAF 397
           H++S +H   S++KT++++      LYY ++ + F F
Sbjct: 127 HMYSTLHQGASSHKTVTKKHNWMLRLYYGNNKVLFIF 163


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 373 KFINFLRLSVSKFRKESYNRFASVRSLPTLEPRAFSASLTTTYRTSTK 516
           KFI+    ++  F     N F + +S PT++P + S+ L+  Y T  K
Sbjct: 248 KFIDAAGSAIQAFESILQNTFFNGKSNPTIDPNS-SSLLSEKYITLDK 294


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,212
Number of Sequences: 5004
Number of extensions: 40127
Number of successful extensions: 100
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)