Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32181
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0020 + 19873173-19873949                                         29   3.2  
03_02_0066 - 5361724-5362373,5362422-5362479,5363797-5364073,536...    28   4.2  
01_05_0779 + 25128320-25128518,25129048-25129141,25129867-251300...    27   7.4  

>03_05_0020 + 19873173-19873949
          Length = 258

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = -1

Query: 512 VEVLYVVVSDAENARGSRVGSDRTDANLLYDSFLNLDTERRRKFMNFY----SRVIFDVT 345
           VE  +V+  D+EN     + S  T   + +D F  L+   ++ F  F     S VIF V 
Sbjct: 184 VEFKHVIHIDSENEELKLLSSLNTWGYIQFDDFCPLNCLEKKLFARFELPCPSDVIFHVI 243

Query: 344 TSYNSME 324
            +Y+S E
Sbjct: 244 GNYDSKE 250


>03_02_0066 -
           5361724-5362373,5362422-5362479,5363797-5364073,
           5364264-5364409
          Length = 376

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = -1

Query: 425 YDSFLNLDTE----RRRKFMNFYSRVIFDVTTSYNSMEPDGRTKKHDSCGVTSL*G 270
           +D F  L+ E    +RR   N     +    +  +  EPD R+ KHD  G TS  G
Sbjct: 212 HDGFFQLEEEAHPAKRRPPFNEMGMPLEGKESVLSVTEPDSRSHKHDQAGPTSAIG 267


>01_05_0779 +
           25128320-25128518,25129048-25129141,25129867-25130078,
           25130924-25131054,25131933-25132041,25132180-25132659,
           25133194-25133531,25133810-25133977
          Length = 576

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 187 GRRFDIWDIINVFYLESYDSATF 119
           G  F +WD+++ ++ ES+ +  F
Sbjct: 271 GSEFQVWDVLDFYFSESFSAVQF 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,802,059
Number of Sequences: 37544
Number of extensions: 219636
Number of successful extensions: 461
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)