Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32181
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.50 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   3.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.7  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.2  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 235 VSKPTLQTTDFLNRSDGRRFDIWDIINV-FYLESY 134
           VS       +F++ SD  +   WDIINV  YL +Y
Sbjct: 179 VSLALYNNKNFVDLSDYWKSGTWDIINVPAYLNTY 213


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 359 IFDVTTSYNSMEPDGRTKK 303
           IFD+ T  N+M   GR++K
Sbjct: 361 IFDIATKENAMLLSGRSQK 379


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +3

Query: 300 MFFRASIRLHRIIRRCHVKNYST 368
           M+FR  + L  + R     NY T
Sbjct: 698 MYFRRQVELSNMYRTMEANNYDT 720


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 476 NARGSRVGSDRTD 438
           N  G+R+GSDR D
Sbjct: 315 NLAGNRLGSDRVD 327


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 308 KKHDSCGVTSL*GV 267
           K HD+CGV +L G+
Sbjct: 324 KIHDTCGVHNLHGM 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,591
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)