Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32177
(337 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 1.0
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 26 1.3
SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces... 25 3.1
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 4.1
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa... 25 4.1
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 4.1
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 25 4.1
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 25 4.1
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran... 25 4.1
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub... 24 5.4
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 24 5.4
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 23 9.4
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 1.0
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -1
Query: 199 ITYEPGSNLNLALTSLRLMKACDLPTDALYLK 104
+ Y G +L+ A L L K CD PTD L LK
Sbjct: 537 VEYYYGKSLHEAALDL-LTKLCDEPTDTLSLK 567
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 204 PSTFDPDEEGEFLLRVFSEKDNNMAEND 287
PST++PD+ GE ++V + D+ D
Sbjct: 599 PSTYEPDKRGEGWIKVKQDYDDEFESLD 626
>SPAC4D7.12c |fet5||transcription factor Fet5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 276
Score = 25.0 bits (52), Expect = 3.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +3
Query: 111 YNASVGRSQAFINLREVSARFKFEP 185
Y SVGRS +NL + F++EP
Sbjct: 26 YMKSVGRSCHLVNLDPAAENFEWEP 50
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 194 VRAGLELESGADLPQVDEGLR 132
V+ +E+++G DLP++ EGL+
Sbjct: 489 VQVAVEVKNGNDLPKLVEGLK 509
>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
Trk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 841
Score = 24.6 bits (51), Expect = 4.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 6 SQRHQGLE-CLTIGFAVYRLPDYGHVPKPLDVNFFKYNASVGRSQAFINL 152
++R+ LE L+ FA R P + + + YN +V R+ AF+ L
Sbjct: 398 NRRNLTLERVLSSAFAKKREPSISSRHTTMSLPYLSYNPTVDRNSAFVAL 447
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 4.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 194 VRAGLELESGADLPQVDEGLR 132
V+ +E+++G DLP++ EGL+
Sbjct: 489 VQVAVEVKNGNDLPKLVEGLK 509
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 24.6 bits (51), Expect = 4.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 90 LDVNFFKYNASVGRSQAFINLREV 161
+ + + YNA+VGR+ AF L V
Sbjct: 452 MSLPYLSYNATVGRNSAFYALTPV 475
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +3
Query: 162 SARFKFEPGSYVIVPSTFDPDEEGEFLLRVFSEKDNNMAEN 284
+ +F E GSY + + + G+F +VF++K+++ N
Sbjct: 47 NVQFVSENGSYKFDDHSIEESKLGDFERKVFNDKNDDFWTN 87
>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
transcription factor Ams2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 697
Score = 24.6 bits (51), Expect = 4.1
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +3
Query: 12 RHQGLECLTIGFAVYRLPDYGHVPKPLDVNFFKYNASVGRSQAFINLREVSA 167
RH L LT + + PD H+ KP VN K ++ +LR + +
Sbjct: 440 RHSPLNRLTSLDSTHSAPDPNHISKPSVVNQQKSRGGPRTAKLKNDLRRIQS 491
>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 462
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 249 VFSEKDNNMAENDEDIGMGDV 311
+F EK ENDE + GDV
Sbjct: 363 LFVEKTAQSTENDEKVDQGDV 383
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 24.2 bits (50), Expect = 5.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 192 YVIVPSTFDPDEEGEFLLRVFSEKD 266
Y VP T+D E E L + +EK+
Sbjct: 78 YKYVPGTYDKPESFEMLNSIIAEKE 102
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 23.4 bits (48), Expect = 9.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 96 VNFFKYNASVGRSQAFINLREVSARFKFEPGSY 194
VN+ YNA + FIN+ ++ F E GS+
Sbjct: 1305 VNYEIYNALIRSIYRFINVEAFNSLFIDERGSW 1337
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 978,845
Number of Sequences: 5004
Number of extensions: 16501
Number of successful extensions: 54
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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