Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32177
(337 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 29 0.71
09_03_0168 - 12983476-12983780,12984180-12984684 29 1.2
09_06_0248 + 21848346-21848907,21849026-21849583,21849889-218499... 27 2.9
10_08_0747 - 20272157-20272456,20272538-20272664,20272770-202728... 27 3.8
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442... 27 3.8
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 27 5.0
07_03_1773 - 29422660-29422806,29423103-29423201,29423811-294239... 27 5.0
04_03_0620 - 18088287-18088495,18089174-18089210,18089315-180893... 26 6.6
02_03_0387 - 18412064-18412144,18412280-18412361,18412922-184131... 26 8.7
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 29.5 bits (63), Expect = 0.71
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 105 FKYNASVGRSQAFINLREV--SARFKFEPGSYVIVPSTFDPDEEGEFLLRVFSEKDNNMA 278
F YN++ R +++V S F E Y I P D D FL R+F +DN+
Sbjct: 306 FPYNSNASRIMTTTRIQDVAQSCCFTHEDYIYDIKPLGSD-DSRKLFLKRIFGNEDNHPT 364
Query: 279 ENDE 290
E E
Sbjct: 365 ELKE 368
>09_03_0168 - 12983476-12983780,12984180-12984684
Length = 269
Score = 28.7 bits (61), Expect = 1.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +3
Query: 222 DEEGEFLLRV----FSEKDNNMAENDEDIGMGDVDDRVKE 329
D+EGE L E N AE++ED +G+VDDR +E
Sbjct: 44 DDEGEELDHASNNSLDEDINEDAEDEEDGKLGEVDDRCEE 83
>09_06_0248 +
21848346-21848907,21849026-21849583,21849889-21849980,
21850122-21850167,21850236-21850423
Length = 481
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -1
Query: 112 YLKKLTSSGLGTCP*SGRRYTANPMVRHSRPW 17
+L++LT+S T P S T NP ++ +RPW
Sbjct: 169 HLRQLTNSA-STSPPSMAMATGNPHLQRARPW 199
>10_08_0747 -
20272157-20272456,20272538-20272664,20272770-20272843,
20272928-20272971,20273697-20276223
Length = 1023
Score = 27.1 bits (57), Expect = 3.8
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Frame = +3
Query: 159 VSARFKFEP-GSYVIVPSTFDPDEEG---EFLLRVFSEKDNNMAENDEDIGMGDVD 314
+SARF G YV++P +F P G EFLL + ++A E G+ V+
Sbjct: 123 LSARFSVSAMGRYVLLPPSFSPPRAGVVREFLLPSDGSGEFDVAFTPESGGLAFVN 178
>01_05_0634 +
23843152-23843272,23843441-23843628,23843876-23844205,
23844319-23844565,23844591-23844668,23844740-23845024,
23845139-23845225,23845365-23845415,23845625-23845761,
23845853-23846437
Length = 702
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 75 HVPKPLDVNFFKYNASVGRSQAFINL 152
H P FF YNA+ GRS+ I L
Sbjct: 122 HTADPPSEVFFSYNATPGRSEEIIGL 147
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 204 PSTFDPDEEGEFLLRVFSEKDNNMAENDEDIGMGDVDDRVKEL 332
PS D D EG+ SE +++ E+D+++ G++DD E+
Sbjct: 71 PSIPDGDSEGD---EDDSEVEDDSEEDDKEVVEGEIDDEEDEV 110
>07_03_1773 -
29422660-29422806,29423103-29423201,29423811-29423915,
29423990-29424136,29424436-29424954
Length = 338
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +3
Query: 243 LRVFSEKDNNMAENDEDIGMGDVD 314
L++ +E+ + +++ED GMGDVD
Sbjct: 306 LKIANEEVDGDEDSEEDTGMGDVD 329
>04_03_0620 -
18088287-18088495,18089174-18089210,18089315-18089395,
18089771-18089838,18093361-18094219
Length = 417
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 84 KPLDVNFFKYNASVGRSQAFINLREVSARFKFEPGSYVIVPSTFDPDEEGEFLL 245
+P +F N S+ SQ + L ++S+ F + P S ++ P+TF D + F+L
Sbjct: 58 RPFLGDFEVVNISLQLSQLRV-LNKISS-FCYNPASKLMEPNTFQSDLDTPFML 109
>02_03_0387 -
18412064-18412144,18412280-18412361,18412922-18413142,
18413387-18413745,18413834-18414443,18414546-18414605,
18414685-18414751,18414843-18414936,18415012-18415125,
18415242-18415308,18415386-18415551,18416587-18417080
Length = 804
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 246 RVFSEKDNNMAENDED 293
R E+DN +AENDED
Sbjct: 215 RALEEQDNILAENDED 230
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,079,982
Number of Sequences: 37544
Number of extensions: 123936
Number of successful extensions: 428
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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