Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32170
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces... 70 2e-13
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.73
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 0.97
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.7
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.2
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 3.9
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 26 5.2
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 25 9.0
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 25 9.0
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 25 9.0
>SPCC548.04 |||ubiquitin family protein Urm1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 113
Score = 70.1 bits (164), Expect = 2e-13
Identities = 38/104 (36%), Positives = 66/104 (63%)
Frame = +1
Query: 253 LTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREEL 432
+ ++V GG +LLFNK K ++L +L S L +L + + + + +++L
Sbjct: 1 MAIKVELLGGLDLLFNKQKALSLSLSNL-----GSTKLG-SLIDYMAQIIEK--PSQKDL 52
Query: 433 FLKDDSVRPGILVLINEEDWELHGQLNYQLKENDKIMFISTLHG 564
F+ + +VRPGI+VL+N++DWEL + Y L+E D+++F+STLHG
Sbjct: 53 FILNGTVRPGIIVLVNDQDWELLEKEEYNLEEGDEVVFVSTLHG 96
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 28.7 bits (61), Expect = 0.73
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 170 RQFTNNCRKFESYLSDLFDFIKIGQENNLIAFRRI 66
++ TNN F S++ + +++ N ++ FRRI
Sbjct: 74 KKVTNNGLPFSSFVKSIVGILEVDASNEILCFRRI 108
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 28.3 bits (60), Expect = 0.97
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -3
Query: 502 HAAPSLLH*STPVYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNS 365
H P L TP+ + +P TTL+ P+G P ST+ +N+
Sbjct: 700 HIEPMLKVSITPIGSFRRPYPLDTTLIVKPSGQPYAPSTSRERNNN 745
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 1.7
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = +1
Query: 238 EMAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLV 417
E E + EL+ N+ + E+ SLK L ++QNL +E L L L
Sbjct: 685 EREEAIVAGQKLSASFELMSNEKQALELKYSSLKNELINAQNLLDRREEELSELSKKLFE 744
Query: 418 ERE-ELFLKDDSVRPGILVLINEEDWELHGQLNYQLKENDKIMFISTLH 561
ER+ DD + + ++N E + Q+ + E+DK+ +H
Sbjct: 745 ERKIRSGSNDDIEKNKEINVLNSELADKLAQIRH--LESDKMELDKLVH 791
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.2
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 313 KEITLPSLKTFLPDSQNLNW---TLKELLIW--LKDNLLVEREELFLKDDSVR 456
K IT S TF P ++++W T E L++ +D ++ RE+ F +++ R
Sbjct: 285 KNITSDSSFTFCPTDKDVDWRTHTAFEQLVYHAYQDRHVINREQFFADEEAKR 337
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = -3
Query: 466 VYQVGQNHPSRTTLLFPPAGCPLTKSTALLTSNSDFENPVKRSSMT 329
++Q+ + T A PL++S +++TS++D + RSS T
Sbjct: 801 LFQLLSEFSKKDTASSTGADTPLSRSQSVITSSTDVTSSASRSSDT 846
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.8 bits (54), Expect = 5.2
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = +1
Query: 304 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVEREELFLKDDSVRPGILVLINE 483
VKR E+TL LK + + W + L L D L + + +F + + E
Sbjct: 224 VKRDELTLEGLKQYFIAVEKEEWKF-DTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMRE 282
Query: 484 EDW---ELHGQLNYQLKENDKIM 543
++ +HG++ KE D IM
Sbjct: 283 ANFTVTSMHGEM--PQKERDAIM 303
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 304 VKRKEITLPSLKTFLPDSQNLNWTLKELLIWL 399
++ + T+P + LP S N L E L WL
Sbjct: 100 IRFRGYTIPECQKLLPSSPNGKQPLPESLFWL 131
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.0 bits (52), Expect = 9.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 418 EREELFLKDDSVRPGILVLINEEDWEL 498
EREE+FL+DD + L++ +D L
Sbjct: 7 EREEVFLEDDQAQHSQAELLSSKDENL 33
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 25.0 bits (52), Expect = 9.0
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 466 VYQVGQNHPSRTTLLFPPAGCPLT 395
VYQ HP R LL P GC T
Sbjct: 199 VYQYTGIHPPRGVLLHGPPGCGKT 222
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,453,443
Number of Sequences: 5004
Number of extensions: 49898
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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