Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32170
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modif...   133   6e-31
AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related modi...   133   6e-31
AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modif...    71   3e-12
AJ437628-1|CAD26875.1|   96|Homo sapiens T-cell receptor beta ch...    30   7.8  

>BC003581-1|AAH03581.1|  101|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  133 bits (321), Expect = 6e-31
 Identities = 64/109 (58%), Positives = 81/109 (74%)
 Frame = +1

Query: 241 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 420
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKE 52

Query: 421 REELFLKDDSVRPGILVLINEEDWELHGQLNYQLKENDKIMFISTLHGG 567
           R ELF++ DSVRPGILVLIN+ DWEL G+L+YQL++ D ++FISTLHGG
Sbjct: 53  RPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-10|CAI13493.1|  101|Homo sapiens ubiquitin related
           modifier 1 homolog (S. cerevisiae) protein.
          Length = 101

 Score =  133 bits (321), Expect = 6e-31
 Identities = 64/109 (58%), Positives = 81/109 (74%)
 Frame = +1

Query: 241 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 420
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLPG--------QEEPWDIRNLLIWIKKNLLKE 52

Query: 421 REELFLKDDSVRPGILVLINEEDWELHGQLNYQLKENDKIMFISTLHGG 567
           R ELF++ DSVRPGILVLIN+ DWEL G+L+YQL++ D ++FISTLHGG
Sbjct: 53  RPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSVLFISTLHGG 101


>AL359091-9|CAI13492.1|   63|Homo sapiens ubiquitin related modifier
           1 homolog (S. cerevisiae) protein.
          Length = 63

 Score = 71.3 bits (167), Expect = 3e-12
 Identities = 37/71 (52%), Positives = 47/71 (66%)
 Frame = +1

Query: 241 MAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIWLKDNLLVE 420
           MA  L+VEV FGGGAELLF+ +K+  +TLP         Q   W ++ LLIW+K NLL E
Sbjct: 1   MAAPLSVEVEFGGGAELLFDGIKKHRVTLP--------GQEEPWDIRNLLIWIKKNLLKE 52

Query: 421 REELFLKDDSV 453
           R ELF++ DSV
Sbjct: 53  RPELFIQGDSV 63


>AJ437628-1|CAD26875.1|   96|Homo sapiens T-cell receptor beta chain
           protein.
          Length = 96

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 19/72 (26%), Positives = 29/72 (40%)
 Frame = +1

Query: 217 VYICYKTEMAETLTVEVMFGGGAELLFNKVKRKEITLPSLKTFLPDSQNLNWTLKELLIW 396
           VY C  +++  T   E  FG G  L   +   K +  P +  F P    ++ T K  L+ 
Sbjct: 14  VYFCASSQVGGTADNEQFFGPGTRLTVLE-DLKNVFPPEVAVFEPSEAEISHTQKATLVC 72

Query: 397 LKDNLLVEREEL 432
           L      +  EL
Sbjct: 73  LATGFYPDHVEL 84


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,691,878
Number of Sequences: 237096
Number of extensions: 1626180
Number of successful extensions: 2857
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2854
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)