Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32169
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.34
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 29 0.34
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 29 0.34
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 29 0.60
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 27 2.4
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.4
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 2.4
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 26 3.2
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 3.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 3.2
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 5.6
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 25 5.6
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 25 5.6
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 25 7.3
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 7.3
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 25 7.3
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 9.7
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.7
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 182 KP-ITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 310
KP +TP PP AP H ++++ S+P +P T S
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANS 767
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 29.5 bits (63), Expect = 0.34
Identities = 17/59 (28%), Positives = 32/59 (54%)
Frame = -3
Query: 262 IRFSLFLLVFVSRQLWSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALPYNL 86
I +FL+++V+ +LWSR+ WS+ + +D V A E++ P+ +P N+
Sbjct: 491 ITLPIFLVLYVAHKLWSRN-WSFGKRIEEID-----VTTGVAEAEALEQMYPAPVPRNI 543
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 29.5 bits (63), Expect = 0.34
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Frame = +2
Query: 23 LYPPLLSTVSDDMA--DNAVYNRQIIR-ESGWDNPFRPDGDLSREADEIVSLIK 175
L P + TVS ++ + A+YN Q+ +S DN F D DLSR +VSL++
Sbjct: 502 LPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLR 555
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 28.7 bits (61), Expect = 0.60
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -1
Query: 207 TGGVGVMGLPPLMSETISSASRLKSPSGRNGLSHPLSRIICLLYTALSAISSLT 46
+GG V LPP + E S+ + +K G HP ++ + T A + LT
Sbjct: 211 SGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARAVLT 264
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 2.4
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Frame = +2
Query: 65 DNAVYNRQIIRESGWDNP--FRPDGDLSREADEIVSLIKGGKPITPTPPVAAPQLPTD 232
+ AV Q +RE+G P F L +E E L+K G I P P VA P +P D
Sbjct: 290 ETAVAKNQAMREAGIYVPETFEKLPALLQEVYE--GLVKKGV-IVPQPEVAPPNIPLD 344
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 194 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKA 337
PT AP LP + ++ + S+PA+ ASPV + P A
Sbjct: 180 PTASANAP-LPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPA 226
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 466 VLCDTVSSQNLTGTTATLSDGSPSPS 543
VL TVSS +++ TT++ S SPS S
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSS 147
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +2
Query: 191 TPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 310
T T P A P+ P EKA N S+P S T S
Sbjct: 419 TSTMPEALPREPLSFSLPEKAPEKATNISIPESAPTTAGS 458
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/46 (21%), Positives = 19/46 (41%)
Frame = -3
Query: 217 WSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALPYNLSV 80
W+ W W+ + ++ Y V A + + PS YN+ +
Sbjct: 202 WANKIWDWTTDVGFVNTTTYAVYDGADTSTNCTTLDPSQWSYNIGI 247
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +1
Query: 166 AHQGRQAHHSNSTGRGSTVAD 228
AH GR HHSNS ST D
Sbjct: 71 AHLGRFTHHSNSLIHASTKED 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 241 LVFVSRQLWSRDRWSWSDGLAALD 170
LV +Q+WS WSW D L+ D
Sbjct: 2066 LVHGIQQIWSAILWSWGDLLSKKD 2089
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 393 KFSALPHRSLSSPNT*P*GRSPSV 464
+FSA+PHR +S+ +T G SP +
Sbjct: 517 QFSAVPHRKVSAQDTNLMGSSPGM 540
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 126 GRNGLSHPLSRIICLLYTALSAISSLTVDSKGGYKM*E 13
G L+ L R ICL IS TVD + G+++ E
Sbjct: 308 GMKKLTEELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 5.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = -1
Query: 225 GNCGAATGGVGVMGLPPLMSETISSASRLKSPSGRNGLS 109
G C G G P L + I S + KS SGR LS
Sbjct: 74 GFCNGTGGSASCTGCPAL-NNRIRSLNASKSQSGRKSLS 111
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +3
Query: 33 PCCPQSATIWRITLCTTDRLYGRADGI 113
PC P +AT+ + LC + ++ R I
Sbjct: 302 PCPPCTATVEKFCLCGKESIHARCSNI 328
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -3
Query: 178 ALDERDYLVRFTAQVAIRTERIIPSA 101
ALD R +LVRF + +I T + +PS+
Sbjct: 539 ALDIRTHLVRFLNKFSIPTAQRLPSS 564
>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = -3
Query: 202 WSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALPYNLSV 80
W WS + +D DY V A V I YN+ V
Sbjct: 269 WDWSTTVGFVDLDDYTVYDGASVTSNCSSITNEQWSYNVGV 309
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 182 KPITPTPPVAAPQLPTDEHKEEKAEANNVNASL 280
K I P PP+ P EH A NN S+
Sbjct: 274 KEILPIPPLPFPSSSKQEHATFVANTNNQPISI 306
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +2
Query: 221 LPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKAMNGTKNGAAV 367
+P + + + A + NA P +P T + S ++ + NGT +G+ +
Sbjct: 347 IPECPSRNKTSWAVSANA-FPVTPNTTICSNAVKNLKCSANGTPSGSKI 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,463
Number of Sequences: 5004
Number of extensions: 47026
Number of successful extensions: 165
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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