Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32169
         (549 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    26   0.29 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   4.7  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.2  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.2  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.2  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.2  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = -3

Query: 271 VNIIRFSLFLLVFVSRQLWSRDRWSWSDGLAALDERDYLVRFTAQVAIRTERIIPSALPY 92
           V+ + F +  L F     W +  W W  G+  L  R Y+   ++ V++ T  I+  ++  
Sbjct: 77  VSDLLFLILGLPFELSVFWQQYPWQWGLGICKL--RAYVSETSSYVSVLT--IVAFSIER 132

Query: 91  NLSVVHSVIRH 59
            L++ H  +RH
Sbjct: 133 YLAIYHP-LRH 142


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 50  SDDMADNAVYNRQIIRESGWDNP 118
           +D   D  V+N Q+I  +G+ NP
Sbjct: 177 TDGKHDYRVWNHQLISYAGYKNP 199



 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
 Frame = -2

Query: 488 ELTVSHSTYTWASSL---WSRVRAAEAPV 411
           E+ +SH TY W   L   W  V A    V
Sbjct: 254 EVPLSHPTYDWFEKLELKWFAVPAVSGMV 282


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 245 EKAEANNVNASLPASPQTKVASPVLQTTPKAMNGTKNGAAVV 370
           ++++A + +AS PA+  T  A+  L        G    +AVV
Sbjct: 204 DESKAGSTDASTPATVTTTGATTTLPAASATGTGPATPSAVV 245


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 191 TPTPPVAAPQLPTDE 235
           +P    A PQLPT+E
Sbjct: 447 SPATTAAPPQLPTEE 461


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 151 RFTAQVAIRTERIIPSALPYNLSVVHSVIRHIVADCGQQ 35
           RF+ +  I    + PSA  Y+L  V + +   VA C ++
Sbjct: 436 RFSGEYEIPAHGLPPSATRYDLGAV-ATVGTTVAPCFEE 473


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -1

Query: 204 GGVGVMGLPP 175
           GG+GV+ LPP
Sbjct: 96  GGIGVLRLPP 105


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 491 KTSPVLPLRFLTVPRL 538
           +T+PVLP RF + P +
Sbjct: 529 ETTPVLPSRFQSHPSI 544


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 24  YTPPCCPQSATIWRIT 71
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 24  YTPPCCPQSATIWRIT 71
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/16 (37%), Positives = 9/16 (56%)
 Frame = +3

Query: 24  YTPPCCPQSATIWRIT 71
           + P CCP    ++ IT
Sbjct: 352 FCPDCCPSDRMVYFIT 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,015
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15704448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)