Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32168
(549 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 33 0.021
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p... 31 0.15
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 29 0.34
SPAC869.10c |||proline specific permease |Schizosaccharomyces po... 28 0.79
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 2.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 2.4
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce... 27 2.4
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 3.2
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 26 3.2
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 5.6
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 25 5.6
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 25 7.3
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 9.7
SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa... 25 9.7
SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 25 9.7
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 33.5 bits (73), Expect = 0.021
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Frame = +1
Query: 22 LYPPLLSTVSDDMA--DNAVYNRQIST-ESGWDNPFRPDGDLSREADXIVSLIK 174
L P + TVS ++ + A+YN Q+S+ +S DN F D DLSR +VSL++
Sbjct: 502 LPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYFNNDHDLSRYGFLLVSLLR 555
>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1033
Score = 30.7 bits (66), Expect = 0.15
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 206 TGGVGVMGLPPLMSETXSSASRLKSPSGRNGLSHPLSVLICLLYTALSAISSLT 45
+GG V LPP + E S+ + +K G HP L+ + T A + LT
Sbjct: 211 SGGKNVKALPPTLEEDNSTQNSIKELQESLGEDHPAGALVGVTKTLDQARAVLT 264
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 181 KP-ITPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 309
KP +TP PP AP H ++++ S+P +P T S
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPPVRSSISPSMPPAPLTHANS 767
>SPAC869.10c |||proline specific permease |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 0.79
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -1
Query: 261 IRFSLFLLVFVSRQLWSRDRWSWSDGLAALD 169
I +FL+++V+ +LWSR+ WS+ + +D
Sbjct: 491 ITLPIFLVLYVAHKLWSRN-WSFGKRIEEID 520
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +1
Query: 193 PTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKA 336
PT AP LP + ++ + S+PA+ ASPV + P A
Sbjct: 180 PTASANAP-LPVPPPRRVSQNSSYASGSVPAATAASTASPVKKPPPPA 226
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +3
Query: 465 VLCDTVSSQNLTGTTATLSDGSPSPS 542
VL TVSS +++ TT++ S SPS S
Sbjct: 122 VLQTTVSSSSVSSTTSSSSSSSPSSS 147
>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 26.6 bits (56), Expect = 2.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 190 TPTPPVAAPQLPTDEHKEEKAEANNVNASLPASPQTKVAS 309
T T P A P+ P EKA N S+P S T S
Sbjct: 419 TSTMPEALPREPLSFSLPEKAPEKATNISIPESAPTTAGS 458
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +3
Query: 165 AHQGRQAHHSNSTGRGSTVAD 227
AH GR HHSNS ST D
Sbjct: 71 AHLGRFTHHSNSLIHASTKED 91
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 26.2 bits (55), Expect = 3.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 240 LVFVSRQLWSRDRWSWSDGLAALD 169
LV +Q+WS WSW D L+ D
Sbjct: 2066 LVHGIQQIWSAILWSWGDLLSKKD 2089
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 25.4 bits (53), Expect = 5.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 46 VSDDMADNAVYNRQISTESGWDNP 117
V D+ D+ + N STES W +P
Sbjct: 82 VGDNNNDSYIINVPFSTESAWSSP 105
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 25.4 bits (53), Expect = 5.6
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +2
Query: 392 KFSALPHRSLSSPNT*P*GRSPSV 463
+FSA+PHR +S+ +T G SP +
Sbjct: 517 QFSAVPHRKVSAQDTNLMGSSPGM 540
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 46 VSDDMADNAVYNRQISTESGWDNPFR 123
VS+ DN + NRQ+STE W++ R
Sbjct: 155 VSNLANDNTLLNRQVSTEE-WNSHLR 179
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -2
Query: 224 GNCGAATGGVGVMGLPPLMSETXSSASRLKSPSGRNGLSHPLSVLICLLYTALS 63
G+ +ATG S + SS+S +S + NG + VL LL AL+
Sbjct: 367 GSATSATGSATTTSYSSDSSASSSSSSSHESSAASNGFTAGALVLGSLLVAALA 420
>SPCC553.09c |spb70|pol12|DNA polymerase alpha
B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +1
Query: 181 KPITPTPPVAAPQLPTDEHKEEKAEANNVNASL 279
K I P PP+ P EH A NN S+
Sbjct: 274 KEILPIPPLPFPSSSKQEHATFVANTNNQPISI 306
>SPBC29A10.08 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 459
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 220 LPTDEHKEEKAEANNVNASLPASPQTKVASPVLQTTPKAMNGTKNGAAV 366
+P + + + A + NA P +P T + S ++ + NGT +G+ +
Sbjct: 347 IPECPSRNKTSWAVSANA-FPVTPNTTICSNAVKNLKCSANGTPSGSKI 394
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.131 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,943
Number of Sequences: 5004
Number of extensions: 44914
Number of successful extensions: 114
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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