Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32166
         (657 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    28   1.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    28   1.4  
SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyce...    26   4.2  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 201 FKERESVLCPFLTKKVVCYFKKTTYNC 121
           FKE+  V  P +T+ ++  F+KT Y C
Sbjct: 684 FKEKAIVTLPVITEALIKGFEKTQYGC 710


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
 Frame = -1

Query: 213 YALDFKERESVLCPFLTK-KVVCYFKKTTY-NC 121
           Y LDF ER   LC FL   K VC      Y NC
Sbjct: 521 YRLDFPERPGALCKFLRSIKEVCSISLFHYRNC 553


>SPBC2D10.15c |||peptidyl-tRNA hydrolase Pth1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 610 PHIIMHHQNKSQVTHTNLTQNFNTIIIYRL 521
           P I++  +NK++V H +L +  +  IIY L
Sbjct: 7   PKILIARKNKAEVNHCDLKRRVSIKIIYGL 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,952
Number of Sequences: 5004
Number of extensions: 40125
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)