Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32166
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical ...    28   5.1  

>Z82058-1|CAB04862.2|  352|Caenorhabditis elegans Hypothetical
           protein T27C5.1 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
 Frame = +1

Query: 22  GVKWLLEPIDIYDVNAPPTLRYKF*GLKYSYSSTVISSLFEITHHLFS*KRTKYT----F 189
           GV  LL+ I I+      TL Y +  L  S +S+++++ F IT++     R  Y     F
Sbjct: 105 GVPTLLQIIIIFVAMLCATLSYIY--LFESRASSLLNNRFRITNNR---SRIVYNCVILF 159

Query: 190 PLFKIKGIP*YLRYTL*GFKY*KLKNYNSSITFLASSISIIFTKK 324
           PL  +     ++R      K   LKNY  +  F  +S+ I+ T K
Sbjct: 160 PLILVLPFLFFVRLDQDTAKLDALKNYCPTREFFTTSVFIVLTDK 204


>AC006682-2|AAF39957.1|  370|Caenorhabditis elegans Hypothetical
           protein R193.3 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -1

Query: 291 QKCN*RVVIFQFLILKALKRIP*ILWYA-LDFKE-RESVLCPFLTKKVVCYFK 139
           +KC     IF  L+    K  P + W++  D K+  E+VL  FL KK+ C F+
Sbjct: 282 EKCATPAGIFDQLV----KEYPHVDWFSSFDMKDCGENVLLEFLEKKIACSFE 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,888,082
Number of Sequences: 27780
Number of extensions: 218606
Number of successful extensions: 331
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 331
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)