Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32164
         (402 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.1  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    25   3.3  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   3.3  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   4.4  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   4.4  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   7.7  
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S...    24   7.7  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -1

Query: 372 KSAFSELXPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 241
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 245 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGX-NSEKADFERAIELT 394
           CD    L+    GSK+          K++  P K   N+E  D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -2

Query: 254 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGVVALPTAYSLPV 108
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 231 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 133
           + PGS   +L G A L G  G   +S+  G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = -1

Query: 390 SSIARSKSAFSELXPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGS 217
           +++     AF+   P SGS      E   P+   +    +      TS L    G  PG+
Sbjct: 295 TTLQSGSQAFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGT 353

Query: 216 VSTILCGRAALYGG 175
           V  IL G + +Y G
Sbjct: 354 VEVILPGPSTIYSG 367


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +2

Query: 251 VKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGXNSEKADFERAIE 388
           V GDL+ +G  +   +  V  + K++  D  +  + EKA  E A++
Sbjct: 277 VVGDLERDGRDTSLGDASVNEAAKETDVDSSRFISDEKAVTEDAMK 322


>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
           S10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 239 EDSWAPGQFLPSYAGG 192
           +D  APG F PS+ GG
Sbjct: 125 DDGAAPGGFAPSFRGG 140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,574,556
Number of Sequences: 5004
Number of extensions: 29739
Number of successful extensions: 73
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)