Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32164
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical pr...    32   0.18 
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr...    32   0.18 
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    32   0.18 
AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical ...    27   5.0  
Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical pr...    26   8.8  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    26   8.8  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    26   8.8  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    26   8.8  

>U80846-5|AAP82647.1|  825|Caenorhabditis elegans Hypothetical
           protein K06A9.1c protein.
          Length = 825

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -1

Query: 402 PYPVSSIARSKSAFSELXPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 223
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 118 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 174

Query: 222 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 124
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 175 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 207


>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
           protein K06A9.1a protein.
          Length = 1032

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -1

Query: 402 PYPVSSIARSKSAFSELXPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 223
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381

Query: 222 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 124
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
           protein K06A9.1b protein.
          Length = 2232

 Score = 31.9 bits (69), Expect = 0.18
 Identities = 27/93 (29%), Positives = 41/93 (44%)
 Frame = -1

Query: 402 PYPVSSIARSKSAFSELXPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLGP 223
           P P SS     S  S     SG+       G+T S+  + PG  S  +  T  +     P
Sbjct: 325 PVPGSSSTIGSSTPSASSSSSGTMSTI--SGSTGSTVTVVPGSSSTFASSTP-IASSSSP 381

Query: 222 GSVSTILCGRAALYGGRGDTQTSLTGGSGATNS 124
           GS  T+  G ++ YG    + +S + G+ +TNS
Sbjct: 382 GSTVTVAPGSSSTYGSSTPSASSSSSGTMSTNS 414


>AF003137-1|AAB93642.1|  294|Caenorhabditis elegans Hypothetical
           protein C27A12.4 protein.
          Length = 294

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 215 TDPGPKNPHNCDVKGDLQLNGPGSKTAELGVVPSVKKSKS 334
           TDP     H+    GDL      SKTAE+ V+P + + KS
Sbjct: 4   TDPSQLYNHHSVTNGDLCT----SKTAEMEVLPPIGRDKS 39


>Z72516-2|CAA96689.2|  513|Caenorhabditis elegans Hypothetical
           protein T25G3.3 protein.
          Length = 513

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 314 KVRRQARRFWNLGRLVVD 261
           + RR A+R W L RLVVD
Sbjct: 410 RTRRTAKRQWKLKRLVVD 427


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 212 ETDPGPKNPHNCD-VKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKGXNSEKAD 370
           ET    K P   + VK +   N    KTA    VP+ KK  S  E     +K++
Sbjct: 41  ETKTLDKRPQTAELVKDEKNSNSEEKKTASANEVPAQKKLNSKEEVKKEKKKSE 94


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase
           2 protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 238 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 146
           R LG      HP   G  VW+ +    + HW
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHW 917


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
           protein 2 protein.
          Length = 1668

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -3

Query: 238 RILGPRVSFYHPMRAGGFVWWSRGHSNVSHW 146
           R LG      HP   G  VW+ +    + HW
Sbjct: 887 RRLGAACGRIHPRGDGAMVWYQKFEYAIGHW 917


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,996,272
Number of Sequences: 27780
Number of extensions: 178544
Number of successful extensions: 414
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)