Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32163
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    28   1.1  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   2.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    27   2.6  
SPAC824.03c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   8.0  

>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 311 KL*SFFKPWQRVSQKEKTNLIKFQVKKKLFKYDEELLRTILNRFSQTIL 165
           K+ SF    +RV   +K +  K Q+  +L  YD+ELL  +   F  T++
Sbjct: 582 KITSFVASAERVGAAKKISNNKAQLALELIGYDDELLPAMQYVFGSTLV 630


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 1   FKLCKRISSFVFLFELHLKLHSIFDRNSFH 90
           F +  R S   F  +L+  LHSI DRN+ H
Sbjct: 227 FSIFYRSSYKKFKQDLYFNLHSICDRNTVH 256


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -3

Query: 466 HSQAYF*KFYLNFTGVIMLALCFRGNTALHPHF 368
           H QAY      NFTG+I L+  FRG      HF
Sbjct: 353 HKQAYAVIRQSNFTGLISLSDGFRGPGNWEDHF 385


>SPAC824.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 452 FLKVLFKFYWSHNASPLFP 396
           F   +F+F W+H A  +FP
Sbjct: 167 FHSYMFQFVWNHQALAIFP 185


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 296 FKPWQRVSQKEKTNLIKFQVKKKLFKYDEE 207
           F PW    +  KTNL +  +  K++ YD+E
Sbjct: 818 FLPW---GKDPKTNLSRRYINYKVYNYDQE 844


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,732
Number of Sequences: 5004
Number of extensions: 36270
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)