Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32163
         (579 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   6.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.8  

>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 238 LKRNYLNMMKNYYALYLIDFHKLF*CYTFVTQ 143
           L  NY     NY  LY  ++ KL+    ++ Q
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQ 116


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 238 LKRNYLNMMKNYYALYLIDFHKLF*CYTFVTQ 143
           L  NY     NY  LY  ++ KL+    ++ Q
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 238 LKRNYLNMMKNYYALYLIDFHKLF*CYTFVTQ 143
           L  NY     NY  LY  ++ KL+    ++ Q
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQ 116


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 445 FKNMPVSDLI*CWC**NNFHPYNFSII 525
           F NM   D + CW     + P N  +I
Sbjct: 448 FFNMVTRDSVWCWDTRKEYIPQNLGVI 474


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 7   LCKRISSFVFLFELHLKLHSIFDRN 81
           +CK I+S   L+ L L L   +DR+
Sbjct: 27  VCKDITSTSALYRLKLYLFCDYDRD 51


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,414
Number of Sequences: 438
Number of extensions: 2577
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)