Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32157
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    29   0.25 
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi...    26   1.7  
SPAC27F1.05c |||aminotransferase class-III, unknown specificty|S...    25   2.3  
SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces pom...    25   4.0  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    24   5.3  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    24   7.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    24   7.0  
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    23   9.2  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 28.7 bits (61), Expect = 0.25
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 13  CRSAAKPIVNEDA*LGNVSSLEGRIFVLYDNVR 111
           C S  KP++N +    NVS  + R F  YD V+
Sbjct: 177 CASDNKPLINNNLSSSNVSENQSRSFGSYDEVK 209


>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 137

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 55  LGNVSSLEGRIFVLYDNVREA 117
           LGN     G  FV+Y+NV++A
Sbjct: 43  LGNTVQTRGTAFVVYENVQDA 63


>SPAC27F1.05c |||aminotransferase class-III, unknown
           specificty|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 318 LTDTFHTQRSCSLSLPSM 265
           L DT+H Q  CSL+ PS+
Sbjct: 426 LADTYHVQVYCSLNNPSV 443


>SPAC22F3.07c |atp20||F0-ATPase subunit G|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 118

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 130 LSRLLPHAHYHITQRYDPPTKTHSPVM 50
           +S+ L    YH +Q+  PP+ THSP +
Sbjct: 54  VSKELVQQVYH-SQKIAPPSNTHSPFL 79


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
 Frame = -1

Query: 284 LYLCRPWYCHY-----NPV*NSRDLGEIFTG--VLLQVNVFNDQ 174
           LY+ + +YCHY      P  N + + E F    V LQ NVF ++
Sbjct: 466 LYILKQFYCHYLDRNRKPPLNIKSVSESFKNFWVYLQ-NVFREE 508


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 1272

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 74 NEDTFPSHASSLTIGLAADLHA 9
          N  +F + A+S T+G++  +HA
Sbjct: 32 NSSSFDNEAASTTLGISTAIHA 53


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 116 ASRTLSYNTKIRPSNEDTFPSHASS 42
           +S+ +  NT+  P+N+ ++P  A S
Sbjct: 277 SSKNIPKNTEALPNNDSSYPDDAES 301


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 273 AEIKSTISVYEKCP 314
           A ++STI +YE CP
Sbjct: 299 AGVESTIKIYEGCP 312


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,500,149
Number of Sequences: 5004
Number of extensions: 29521
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)