Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32157
         (332 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   3.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   6.8  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   6.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   6.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   9.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 128  VAIIASRTLSYNTKIRPSNEDTFPSHASSL 39
            + + A+ T S   K+RP   D  P H  ++
Sbjct: 1372 ITLTATTTNSLTMKVRPHPTDNAPIHGYTI 1401


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.0
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 177  VIENVYLQEYTCKYFA*ISGVLYRIVMTI 263
            VIE++ + +Y     A +SGVL  +V+ +
Sbjct: 985  VIESIMVSDYLPLVAATLSGVLVLLVIIV 1013


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 162 IHYHLVIENVYLQ 200
           + YHL + N+Y+Q
Sbjct: 915 VKYHLFLTNLYIQ 927


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 162 IHYHLVIENVYLQ 200
           + YHL + N+Y+Q
Sbjct: 953 VKYHLFLTNLYIQ 965


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 125 AIIASRTLSYNTKIRPS 75
           AI+ S ++SY+ ++RP+
Sbjct: 14  AILDSFSVSYDKRVRPN 30


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -1

Query: 125 AIIASRTLSYNTKIRPS 75
           AI+ S ++SY+ ++RP+
Sbjct: 14  AILDSFSVSYDKRVRPN 30


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 265 GIVITILYKTPEI*AKYLQ 209
           GIV   LYK  ++ AK +Q
Sbjct: 79  GIVYKALYKGEQVAAKIIQ 97


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 210 RCTLASKRFQ*PGGNEC 160
           +C+L  +RF+  G   C
Sbjct: 273 KCSLCQRRFEEQGNYSC 289


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 76  PTKTHSPVM 50
           PT THSP M
Sbjct: 600 PTLTHSPTM 608


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,522
Number of Sequences: 438
Number of extensions: 2191
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)