Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32156
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ...    28   0.66 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    26   3.5  
SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    25   8.1  

>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 441

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +2

Query: 290 LEI*VLGLSIVTTAAPPFKPKRTTASRQI*AGWWYLPA 403
           LE   LGLS V T +P F+ +++  SR + A +W L A
Sbjct: 211 LEALALGLSRVYTISPAFRAEQSHTSRHL-AEFWMLEA 247


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 210 GGRDHNPPGVKWLLEPIDIYN 272
           GG  H+P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPCC4F11.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 106 DYSNFLKERDSFM*IVNSDA 165
           ++SN+L++ DSF   +N+DA
Sbjct: 194 NFSNYLRDNDSFQFGMNTDA 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,689,829
Number of Sequences: 5004
Number of extensions: 28828
Number of successful extensions: 48
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)