Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32156
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0332 + 24477289-24477339,24477602-24477877,24478565-244787...    27   8.1  
02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300     27   8.1  

>04_04_0332 +
           24477289-24477339,24477602-24477877,24478565-24478702,
           24478799-24480343
          Length = 669

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = -2

Query: 477 GTVLTICPSTGEKSEKRT*LN-LRVRAGRYHHPA*ICREAVVRFGLKGGAAVVTI----- 316
           G V    P+T    E R  +  L VRAG    PA  C EAVV   L+G AA+  I     
Sbjct: 25  GKVFRGYPATAAAREGRAEVAALLVRAGA-SQPA--CEEAVVEAALQGQAALAVIFMGSD 81

Query: 315 -LRPRTYISSWVA 280
            +RPR  + + V+
Sbjct: 82  LVRPRVAVHALVS 94


>02_05_0818 + 32004749-32005347,32005905-32006415,32006539-32007300
          Length = 623

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = +2

Query: 209 GWTRSQPTWC*VVTGAY*HLQRKCATQLEI*VLGLSIVTTAAPPFK 346
           GW      W   +  AY HL+R C  ++ +    L+++  + P FK
Sbjct: 132 GWGAYVSPWVAALGPAYPHLERICLKRMTVSNDDLALIAKSFPLFK 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,236,822
Number of Sequences: 37544
Number of extensions: 205069
Number of successful extensions: 292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)