Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32151
         (660 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   3.2  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    27   3.2  
SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces ...    26   4.2  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 68  ERYPWGV*LLPEARYPPPTDAPGGSPAKLPHRTEP 172
           ERYP  V   PE  + PP    G   A +P R EP
Sbjct: 603 ERYPGRVFSKPEFVHLPPFIFEGADFALIPSRDEP 637


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/27 (29%), Positives = 21/27 (77%)
 Frame = -2

Query: 95  AVILPRGIAPSLLVVLWRERLSDVDQN 15
           A+I+P  + P+++++++ ER ++ D+N
Sbjct: 245 AIIMPAVMTPAVIILMYLERQANKDEN 271


>SPAC806.06c |||nicotinamide mononucleotide |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 244 FYNHRFRQDSRDLGGPPMRTXACRGFRPV 158
           F  HRFR    D G  P+   AC  F P+
Sbjct: 108 FPKHRFRNHLVDEGKIPLVLVACGSFSPI 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,043
Number of Sequences: 5004
Number of extensions: 58742
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)