Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32147
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    26   4.2  
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    26   5.5  
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb...    26   5.5  
SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomy...    25   7.3  
SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|c...    25   7.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.6  

>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 562 FVTCDVIPRLAASCQLLLNFVKFHFFVLREII 467
           F   D+IP        LLNFVK  F  + E++
Sbjct: 450 FTLGDIIPNYLTLADYLLNFVKTSFAQIYELV 481


>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = +2

Query: 437 LGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGNYITRYKITGSRSGRRSIDRHKQIY 616
           L +DDY+KF +DL K +       K+K+  C           I  S +      RH +++
Sbjct: 340 LNVDDYRKFREDLWKKR-----HGKRKVYQCSNCSQTFINEDIQNSSAFCPKCIRHSKLF 394

Query: 617 WL 622
            L
Sbjct: 395 SL 396


>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 923

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 340 LRERDGFSIGLGISKFGKRLEGFL 269
           L   D F++ + +SK GK   GFL
Sbjct: 804 LTRNDPFTLTIAVSKIGKNASGFL 827


>SPAC13D6.04c |btb3||BTB/POZ domain protein Btb3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +2

Query: 404 AIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGNYITRY 559
           A+  KKL S    ++D Q+FL+     ++ +L+ +K  +     P N + ++
Sbjct: 34  AMDEKKLSSSLFTVNDTQEFLELCEACRRGDLEVVKSLVENYNTPINQVDQF 85


>SPAC23C11.16 |plo1||Polo kinase Plo1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 497 LDEIKKKLTTCGQPGNYITRYKITGSRSG 583
           +D+ ++K+T CG P NYI    +  S+ G
Sbjct: 189 MDDEERKMTICGTP-NYIAPEILFNSKEG 216


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +2

Query: 122 RKMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSE 250
           R+  T A N ++  ++ TQ     KLEN      S  +SSKS+
Sbjct: 862 RETRTSASN-ESDPKKSTQRDSSKKLENSTVVSGSPSSSSKSD 903


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,644
Number of Sequences: 5004
Number of extensions: 53458
Number of successful extensions: 157
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)