Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32147
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0599 - 26012956-26013316,26013444-26013736,26013813-260140... 30 1.9
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 29 4.3
07_03_1273 + 25369661-25369815,25369957-25370329,25371477-253715... 29 4.3
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 28 5.7
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 28 7.5
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 28 7.5
06_01_0136 + 1043888-1044487 28 7.5
02_04_0469 - 23178589-23178755,23179529-23179697,23179836-231799... 27 9.9
02_01_0780 - 5818597-5819181 27 9.9
>03_05_0599 -
26012956-26013316,26013444-26013736,26013813-26014040,
26014666-26014897,26015392-26015475,26015562-26015623,
26016263-26016367,26016458-26016481
Length = 462
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +2
Query: 5 ATAGSISAATKSASLKRLSATDSLA*YMISSHKYIKHL*RKMSTEAQNTDAAVEQVTQEV 184
AT G+++ A +A+ L AT + M S + L E Q D + + T V
Sbjct: 115 ATLGTVATAVANANATALEATKEIEAAMKVSMRAALGLGANNPKEGQLDDLTIMKETLRV 174
Query: 185 KDVKLEN 205
KD +L+N
Sbjct: 175 KDEELQN 181
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +2
Query: 467 DDLAKNKKVELDE-IKKKLTTCGQPGNYITRYKITGSRSGRRSIDRHKQ 610
D+ AKN K++L E + +LTTCG N K + R +D Q
Sbjct: 200 DEDAKNWKLQLGEKLANQLTTCGYKSNLRDSSKASSQTVFERKMDEKLQ 248
>07_03_1273 +
25369661-25369815,25369957-25370329,25371477-25371577,
25371749-25371785
Length = 221
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 631 CLCEPVYLLVSVNRSTAAAAAGDFVTCDVIPRLAAS 524
C EP V++ AAA GD +T D + LAA+
Sbjct: 38 CSTEPSPEWVAIGSPATAAAGGDLLTPDALAELAAA 73
>11_06_0061 - 19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = +1
Query: 307 QVRWKSHHALAKRQMDEASQSH*WKENNNNGHGHSLQKTQIGKTR 441
++RWK K++ ++A S ENNN H K Q R
Sbjct: 1006 KLRWKGQKMSKKKEDEDAELSRLKAENNNAEEAHGDAKRQFDSIR 1050
>11_06_0768 +
27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 249 RIAPYLSRKPSRRFPNLEIPSPMEKPSRSRKATNG 353
R+ P ++ S R P + IP P++ PS+ AT G
Sbjct: 11 RLGPSAAKSTSARVPGV-IPKPIDLPSQRGTATQG 44
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 125 KMSTEAQNTDAAVEQVTQEVKDVKLENGNAPGASNG 232
++S EAQ + AVE + K K N N GA G
Sbjct: 57 RISLEAQVVEQAVEVAASKKKSGKNNNNNGEGAKKG 92
>06_01_0136 + 1043888-1044487
Length = 199
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 634 RCLCEPVYLLVSVNRSTAAAAAGDFVTC 551
R C VY +V+ N+S AAAA+ + C
Sbjct: 170 RVSCSDVYFVVADNKSAAAAASSTPIDC 197
>02_04_0469 -
23178589-23178755,23179529-23179697,23179836-23179919,
23180495-23180647,23180798-23180950,23182488-23182589
Length = 275
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +2
Query: 422 LKSVK--LGIDDYQKFLDDLAKNKKVELDEIKKKL 520
LKS++ + IDD QK +DD A+ K + DEI L
Sbjct: 109 LKSIQNEINIDDVQKLMDDTAEAKAYQ-DEINAAL 142
>02_01_0780 - 5818597-5819181
Length = 194
Score = 27.5 bits (58), Expect = 9.9
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Frame = +2
Query: 422 LKSVKLGIDDYQK-FLDDLAKNKKVELDEIKKKLTTCGQPGNYITRYKITGSRSGRRSID 598
+K ++ +D Y++ F A+ + D +K+ L C P N R + + S GRR+
Sbjct: 126 VKRAEINLDYYRRCFFPCPARLDRAAAD-LKEAL--CFVPDNARARARCSASARGRRAAT 182
Query: 599 RHKQIYWLAQAALR 640
R + WL AA++
Sbjct: 183 RRR--IWLGHAAVK 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,702,766
Number of Sequences: 37544
Number of extensions: 366274
Number of successful extensions: 1120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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