Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32146
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820     33   0.12 
03_06_0731 - 35780790-35781575,35781671-35781970                       30   1.5  
05_05_0321 + 24091997-24092530                                         29   2.0  
01_01_0937 - 7388230-7388283,7388957-7389091,7389201-7389365,738...    29   2.6  
03_02_0637 - 10009580-10009903,10013314-10014153                       29   3.4  
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    28   4.5  
02_05_0429 - 28916583-28916882,28917286-28917408,28917484-289175...    28   6.0  

>04_04_1047 - 30408962-30409105,30409204-30409304,30409733-30409820
          Length = 110

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 59  RPKGIQQLLAAEKRAAEKVSEAREAKS 139
           R  GIQQLLAAE+ A + V+ AR AKS
Sbjct: 6   RQSGIQQLLAAEQEAQQIVNAARAAKS 32



 Score = 31.9 bits (69), Expect = 0.37
 Identities = 20/79 (25%), Positives = 35/79 (44%)
 Frame = +3

Query: 135 KAKRLKQAKEEAQDEVXXXXXXXXXXXXXXXAKHMGTXEGVAAKIDAETKVKIEEMNKMV 314
           K+ RL+QAKEEA+ E+               A+  G       +++ ET  KI ++ +  
Sbjct: 31  KSARLRQAKEEAEREIAEYRAQMEAEFQRKVAESSGDSGANVKRLEQETAEKIAQLKQQA 90

Query: 315 QTQXEAXIKDVLNLVYDIK 371
            +     I+ +L  V  +K
Sbjct: 91  ASISPEVIQMLLRHVTTVK 109


>03_06_0731 - 35780790-35781575,35781671-35781970
          Length = 361

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 WVPXKVLRPRSMPRPKLRSKR 300
           W   KV+RPR  PRP  RSKR
Sbjct: 320 WGESKVVRPRVRPRPGRRSKR 340


>05_05_0321 + 24091997-24092530
          Length = 177

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/80 (25%), Positives = 37/80 (46%)
 Frame = +1

Query: 52  ASQTQGNPTASSC*KTRCGESQRGKGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKP 231
           A   Q  P++SS  +    E+   +  +++ A +   RRL+ +   +  S  GS   +  
Sbjct: 77  AENGQARPSSSSE-QEEAAEAASRRQQQQQAAAAARERRLRRRRSDSRGSCGGSGDGVLL 135

Query: 232 STWVPXKVLRPRSMPRPKLR 291
           + +VP  + R  + PRP  R
Sbjct: 136 NFYVPGLLTRSMTTPRPAAR 155


>01_01_0937 -
           7388230-7388283,7388957-7389091,7389201-7389365,
           7389436-7389516,7389692-7389767,7389855-7389988,
           7390082-7390174,7390885-7391018,7391125-7391533,
           7392381-7392593
          Length = 497

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 83  LAAEKRAAEKVSEAREAKSETPKAGQGGGSR*S*KVQTGA*KAVQRI 223
           LAA +R++   S A  A ++ P  G+GGG     K   GA  A +R+
Sbjct: 5   LAASRRSSSSSSVAAAAAAKRPAVGEGGGGG-GGKAAAGAAAAKKRV 50


>03_02_0637 - 10009580-10009903,10013314-10014153
          Length = 387

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = +2

Query: 56  VRPKGIQQLLAAEKRAAEKVSEAREAKSETPKAGQGGGSR 175
           VRP+ +++  AA +    + +EAREA + +P   +G GSR
Sbjct: 87  VRPELLRRARAAWRGFFARPAEAREAYANSPATYEGYGSR 126


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 195 VCTFQLHLEPPPWPALG 145
           V  FQ  + PPPWPA G
Sbjct: 231 VAAFQSRMMPPPWPARG 247


>02_05_0429 -
           28916583-28916882,28917286-28917408,28917484-28917561,
           28917889-28917950,28918260-28918347
          Length = 216

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 59  RPKGIQQLLAAEKRAAEKVSEAR 127
           R  GIQQLLAAE+ A + V+ AR
Sbjct: 6   RQGGIQQLLAAEQEAQQIVNAAR 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,020,607
Number of Sequences: 37544
Number of extensions: 198739
Number of successful extensions: 600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)