Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32145
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 28 1.3
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 28 1.3
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 27 2.2
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces... 27 2.2
SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc... 27 2.9
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom... 27 2.9
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||... 26 3.8
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc... 26 5.1
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.1
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 25 8.8
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 21 LKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKLIKDNTTVE 158
L C +E S SHE P S+ ++++ K + + ++TTV+
Sbjct: 565 LSSCMEEFVSSFSHELTPFASQLAKQLRNTFVKLMQETMDESTTVD 610
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/69 (20%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Frame = +3
Query: 183 PSVLASLAV---QNLSLDKACRVNL-NYSDEVCTALTLRQTENYTEAEENVQRLIASVQV 350
P +L L + Q++ + +NL ++E+C +L + ++ +V+R+ A +++
Sbjct: 429 PVILPDLEIPGSQSIVENMRAVINLAKLTNEICDSLYWNPSPSFESQVNSVRRIYARLEL 488
Query: 351 WKNVVQTAI 377
WK+ + +++
Sbjct: 489 WKSDLHSSV 497
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 27.1 bits (57), Expect = 2.2
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = -1
Query: 616 YITYIAKGTNEIREPIPQ*SPGK*IQ*TPSLQRVIHKRNMCLR*NPNKIKIHQLSGSKMH 437
Y+T +AKG + P + K + R+I +N R +K++I QL G +H
Sbjct: 521 YVTEMAKGG---KLPTESKNKAKVQNDLARIYRIIKSQNKMSR--SSKLQIKQLYGQVLH 575
Query: 436 AFLLPVLS 413
A LP+ S
Sbjct: 576 ALSLPLPS 583
>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 129
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +1
Query: 442 FCCPIVGEFLSCLGFIVNTYFFYELPVEVTAFTESIFPAI 561
F PI+G F+ CLGF FY L + I P I
Sbjct: 79 FHFPIIGFFVECLGFFNLFKVFYPLIISFLRTVPYIGPYI 118
>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 2.9
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +3
Query: 96 EIKKLTFKQRLKLIKDNTTVEPIMA-CYVMP-SVLASLAVQNLSLDKACRVNLNYSDEVC 269
EI T + L + N +EPI + C ++ S L V L+ +NY+D+
Sbjct: 144 EIYSNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGL 203
Query: 270 TALTLRQTENYTEAEENVQRLIA 338
AL + + +A N+Q +A
Sbjct: 204 AALIMTAEGDMRQAVNNLQSTVA 226
>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 26.6 bits (56), Expect = 2.9
Identities = 8/32 (25%), Positives = 16/32 (50%)
Frame = -3
Query: 392 YHTYWYSRLHNVFPNLDTRYQSLYVFFRLRVV 297
+ YW+ ++H + P D Y+ V L ++
Sbjct: 593 WQEYWHCKIHKLLPKEDASYEQKVVLLTLSLL 624
>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 102 LFRERFLISTGMFREILSSTLHRHKLSGL 16
+F RF ++T R I + H H LSGL
Sbjct: 138 IFVHRFSLATMPLRNIFKNCAHYHLLSGL 166
>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 677
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 621 CSISPT*LKAPMKFVNPSPSDRRENRFSKRRHFN 520
C SP L+ + NPS +D RE+ K HF+
Sbjct: 590 CEPSPV-LRLRTRDSNPSNTDSRESNHKKYNHFH 622
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 600 LKAPMKFVNPSPSDRRENRFS 538
L+APM F +P+ R NRFS
Sbjct: 986 LRAPMSFFETTPTGRILNRFS 1006
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 15 KDLKVCDDEECSKGSHETCPLKSENVREIKKLTFKQRLKL 134
++LK DDEE T K E + + KL + +LKL
Sbjct: 399 ENLKSYDDEEAILSEKNTDMKKLERIEGLVKLVDEYKLKL 438
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,893
Number of Sequences: 5004
Number of extensions: 56989
Number of successful extensions: 169
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -