Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32145
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 33 0.18
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 30 1.3
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 30 1.3
01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454 29 2.3
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 29 3.0
01_06_1580 - 38406740-38407257,38407481-38407552,38408309-384083... 29 3.0
12_02_0674 - 21745321-21746223,21746229-21747608 29 3.9
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785... 29 3.9
12_01_1092 - 11362094-11362367,11362739-11362795,11363256-113636... 28 6.9
03_02_0531 - 9240635-9240957,9241742-9241865,9241961-9242103,924... 28 6.9
07_01_1032 - 8947594-8947769,8947885-8948601,8948973-8949049,894... 27 9.1
04_04_1312 + 32565447-32565585,32566008-32566060,32566139-325667... 27 9.1
04_04_1311 - 32559549-32559674,32559761-32560078,32560158-325602... 27 9.1
04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218 27 9.1
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 33.1 bits (72), Expect = 0.18
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +3
Query: 219 SLDKACRVNLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVIL 395
S D+AC + DE + L E+Y ++ +Q L ++ +W + + A+P+ V+L
Sbjct: 412 SPDRACNLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDISEALPIYVVL 470
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +3
Query: 246 LNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKTG 425
L+ S L+L Q T N + +Q+W N + + V + G WS T
Sbjct: 581 LSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAASCVSVAGLFISGEWSSLTA 640
Query: 426 K 428
+
Sbjct: 641 E 641
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 30.3 bits (65), Expect = 1.3
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = +3
Query: 141 DNTTVEPIMACYVMPSVLASLAVQNLSLDKACRVNLNYSDEVCTALTLRQTENYTEAEEN 320
D T +PI + + + N S DKAC++ N DE L ENY ++
Sbjct: 153 DLTPTDPIRLGLALNISVFYCEIMN-SPDKACQLAKNAFDEAVAELPSLSEENYKDSTLI 211
Query: 321 VQRLIASVQVWKN 359
+Q L ++ +W +
Sbjct: 212 MQLLRDNLALWNS 224
>01_04_0112 - 16127785-16128279,16128883-16128986,16129304-16129454
Length = 249
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 342 HSLSVFVRFLPPPCSFPFVVMLKPC-RP 262
H+ S+FV LP PC P V L C RP
Sbjct: 123 HTPSIFVADLPLPCGLPVAVALDMCLRP 150
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = -3
Query: 563 VIAGKIDSVNAVTSTGNS*KKYVFTMKPKQDKNSPTIGQQNARFSFTSLVAPRP 402
++ G D V VTS GN + Y K Q K + IG ++ F P P
Sbjct: 207 IVVGLFDYVEGVTSEGNKVRVYTQVGKSSQGKFALDIGVKSLNFYKDYFDTPYP 260
>01_06_1580 -
38406740-38407257,38407481-38407552,38408309-38408365,
38408476-38408532,38408643-38408699,38408809-38408865,
38409371-38409424,38409744-38409800,38410023-38410076,
38412208-38412220,38413530-38413580,38414134-38414193,
38414640-38414761,38415033-38415894,38416468-38416667,
38417159-38417238,38417525-38417619
Length = 821
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 18 DLKVCDDEECSKGSHETCPLKSEN 89
D++VCD + C KG H C K E+
Sbjct: 25 DIRVCDFKNCLKGYHPHCVGKEES 48
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 293 GKLHGGGRKRTKTDSECPSLEKRCANGYTSMCDII 397
G GGGR KT EC L KR + T+ C +
Sbjct: 371 GNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSAL 405
>04_03_0976 +
21376873-21377289,21377399-21377581,21378463-21378591,
21378869-21378999,21379111-21379270,21379783-21380067
Length = 434
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 21 LKVCDDEECSKGSHETCPLKSENVREIKKLTFK 119
L+VC + C HETC L+ E + +LT K
Sbjct: 186 LEVCLEFACKSLEHETCTLEKEAYPALDELTSK 218
>12_01_1092 -
11362094-11362367,11362739-11362795,11363256-11363683,
11364350-11365462
Length = 623
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/72 (26%), Positives = 36/72 (50%)
Frame = +3
Query: 243 NLNYSDEVCTALTLRQTENYTEAEENVQRLIASVQVWKNVVQTAIPVCVILFVGAWSDKT 422
N+ +S+ C+A+ +QT + T AEE Q+ I + W + + + I + V+ +++
Sbjct: 110 NIEFSNCFCSAIIGKQTGSSTSAEEQKQKNI--LHCWISWLFSDIVIPVVRTYFYVTERE 167
Query: 423 GKRKACILLPDS 458
KR P S
Sbjct: 168 SKRYDVFYYPKS 179
>03_02_0531 -
9240635-9240957,9241742-9241865,9241961-9242103,
9242205-9242340,9242468-9242796,9243236-9243305
Length = 374
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 174 YVMPSV--LASLAVQNLSLDKACRVNLNYSDEVCTAL 278
Y +P+ +A LAVQ LS+D CR + D+V TAL
Sbjct: 330 YSLPAAQKIAGLAVQCLSMDARCRPGM---DQVVTAL 363
>07_01_1032 -
8947594-8947769,8947885-8948601,8948973-8949049,
8949264-8949655,8949746-8950002,8950234-8950921
Length = 768
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 494 FTMKPKQDKNSPTIGQQNARFSFTSLVAPR 405
FT K KQ + + IG+ ARF FTS +A R
Sbjct: 185 FTKKGKQAREA--IGESRARFFFTSGIAAR 212
>04_04_1312 +
32565447-32565585,32566008-32566060,32566139-32566771,
32566844-32566972,32567052-32567144,32567220-32567336,
32567412-32567512,32567603-32567870,32568236-32568265,
32568361-32568572,32568650-32568731,32568804-32569555,
32569640-32569811,32570412-32570498,32570578-32570895,
32570982-32571107
Length = 1103
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 326 KTDSECPSLEKRCANGYTSMCDIIRRGVERQDW 424
+ D E P L SM D I++GV+ +DW
Sbjct: 290 ENDIETPRLNHYTEEKVISMIDAIKKGVKLKDW 322
>04_04_1311 -
32559549-32559674,32559761-32560078,32560158-32560244,
32560845-32561016,32561101-32561852,32561925-32562006,
32562084-32562295,32562391-32562420,32562786-32563074,
32563143-32563243,32563319-32563435,32563511-32563603,
32563683-32563811,32563884-32564516,32564765-32564844,
32565152-32565164
Length = 1077
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 326 KTDSECPSLEKRCANGYTSMCDIIRRGVERQDW 424
+ D E P L SM D I++GV+ +DW
Sbjct: 257 ENDIETPRLNHYTEEKVISMIDAIKKGVKLKDW 289
>04_03_0511 - 16664923-16665509,16665600-16665902,16665954-16666218
Length = 384
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -1
Query: 484 NPNKIKIHQLSGSKMHAFLLPVLSLHAPTNNITHTG 377
NP +++ Q SK++ F L L LH ++I +TG
Sbjct: 254 NPEMLQLSQEEDSKLYIFHLNGLKLHIWFHDINNTG 289
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,855,645
Number of Sequences: 37544
Number of extensions: 359145
Number of successful extensions: 826
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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