Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32145
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.2  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   9.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 563 VIAGKIDSVNAVTSTGNS*KKYVFTM 486
           +IAGKI S+N +T+T      Y+ T+
Sbjct: 294 LIAGKIMSINNLTATAQMLGLYMVTV 319


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 392  YHTYWYSRLHNVFPNLDTRYQSLYVFFRLR 303
            +  +W+ RL  +    D  Y  +++FF  R
Sbjct: 980  FRGFWHHRLAEIKRRPDLEYGKVWLFFGCR 1009


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 13/73 (17%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
 Frame = +3

Query: 195 ASLAVQNLSLDKACRVNLNYSDEV------CTALTLRQTENYTEAEENVQRLIASVQVWK 356
           A   +   ++D    VN +  DE       C        +     +EN+ + + S+ + +
Sbjct: 35  AESGIDQQTVDDINEVNFDVEDEKPQRYNECILKQFNIVDESGNFKENIVQELTSIYLDE 94

Query: 357 NVVQTAIPVCVIL 395
           NV++  +  C ++
Sbjct: 95  NVIKKLVAECSVI 107


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 597  KAPMKFVNPSPSDRREN 547
            + P   ++PSPSDR  N
Sbjct: 1371 RVPTVDLSPSPSDRGRN 1387


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,243
Number of Sequences: 438
Number of extensions: 4511
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)