Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32135
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...   211   6e-56
SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual         181   9e-47
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    53   4e-08
SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4 |Schiz...    31   0.19 
SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    30   0.26 
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    25   9.7  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    25   9.7  
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces...    25   9.7  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    25   9.7  

>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score =  211 bits (516), Expect = 6e-56
 Identities = 112/225 (49%), Positives = 141/225 (62%), Gaps = 6/225 (2%)
 Frame = +3

Query: 3   QTLKYNLPTAFRITGSKGEADALMKIVNSDYFSQLLNXXXXXXXXXXXXXXXPVNLPWYP 182
           Q L   LPT FRIT S   A  +      DYF +                  PV+LPWYP
Sbjct: 35  QKLTEQLPTTFRITASIPHATQVR-----DYFIEHYYPLIENARTEDAKIPLPVSLPWYP 89

Query: 183 GGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPHHKVLD 362
            G A+ L +++  IR++  L  L  FLV ET AG ++RQE VSM+PP++L+V+ HHKVLD
Sbjct: 90  DGMAFMLDISKEVIRKSPHLKALQEFLVLETEAGDINRQESVSMVPPLLLNVESHHKVLD 149

Query: 363 MCAAPGSKTAQLIEFLHADEDK------MPTGFVMANDVDNSRCYMLVHQAKRLNSPCIV 524
           MCAAPGSKTAQL+E LH    K      +P+G V+AND DN R +MLVHQ KRLNSP ++
Sbjct: 150 MCAAPGSKTAQLLEALHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVL 209

Query: 525 ITNHDSAFMPSIEVTDEQDPSKTKPLKFDRILCDVPCSGDATLRK 659
           I NHD++F+P+  ++    P   K LKFDRIL DVPCSGD T RK
Sbjct: 210 IVNHDASFLPNFHLS---SPDGKKFLKFDRILADVPCSGDGTFRK 251


>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score =  181 bits (440), Expect = 9e-47
 Identities = 107/230 (46%), Positives = 129/230 (56%), Gaps = 17/230 (7%)
 Frame = +3

Query: 21  LPTAFRITGSKGEADALMKIVNSDYFSQLLNXXXXXXXXXXXXXXXPVNLPWYPGGFAWQ 200
           LPT FRI G +  A  L       Y   L N               P  LPWYP G A+ 
Sbjct: 57  LPTTFRICGYRHHAFELKNHFEKYYVPSLKNVVHEGQTIPP-----PTVLPWYPDGLAYI 111

Query: 201 LRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPHHKVLDMCAAPG 380
           +   +  IR++  L RL  FLV+E  AG ++RQE VSM+PP+ LDV+PHH +LDMCAAPG
Sbjct: 112 VDAQKDVIRKSPPLKRLQRFLVSENEAGNINRQEAVSMLPPLFLDVEPHHVILDMCAAPG 171

Query: 381 SKTAQLIEFLH-------ADED----KMPTGFVMANDVDNSRCYMLVHQAKRLNSPCIVI 527
           SKTAQLIE ++       A  D    K   G V+AND D  R  MLVHQ  RLNSP I++
Sbjct: 172 SKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRLNSPNILV 231

Query: 528 TNHDSAFMPSIEVTDEQDP------SKTKPLKFDRILCDVPCSGDATLRK 659
            NHD++ MP+I V             + K LKFDRIL DVPCSGD T RK
Sbjct: 232 VNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILADVPCSGDGTFRK 281


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 52.8 bits (121), Expect = 4e-08
 Identities = 39/130 (30%), Positives = 57/130 (43%)
 Frame = +3

Query: 270 ETAAGGVSRQEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVM 449
           E  AG    Q   S +P + L  +P+ ++LDM +APG K   +         +  TG + 
Sbjct: 315 EYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAAL------QKNTGIIF 368

Query: 450 ANDVDNSRCYMLVHQAKRLNSPCIVITNHDSAFMPSIEVTDEQDPSKTKPLKFDRILCDV 629
           AND + +R   L     RL     ++ N+D    P+ EV             FDR+L D 
Sbjct: 369 ANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPN-EVIG----------GFDRVLLDA 417

Query: 630 PCSGDATLRK 659
           PCSG   + K
Sbjct: 418 PCSGTGVIYK 427


>SPAC1556.08c ||SPAC1F12.01c|protein kinase activator Snf4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 297 QEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHAD 419
           + ++  IPP  + V P H ++D C A     A+ I  +  D
Sbjct: 109 ERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDVD 149


>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 30.3 bits (65), Expect = 0.26
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 282 GGVSRQEQVSMIPPVVLDVKPHH--KVLDMCAAPGSKTAQL 398
           G V  Q++ S  P  VL     H   ++D CAAPG+KT  L
Sbjct: 188 GKVIIQDKASCFPAAVLAGLTGHVGDIIDGCAAPGNKTTHL 228


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 340 NLTIRCLTCVLPRGLRPHNS*NSY 411
           N  ++C+  VLP+   PH+  N Y
Sbjct: 421 NNILKCVMIVLPKEFNPHSFCNQY 444


>SPCC417.08 |tef3||translation elongation factor
            eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +3

Query: 207  LTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPHHKVLD 362
            L R +I  + +L  L   LV+ +   G+S  ++V ++      ++PH  VLD
Sbjct: 877  LVRKEIEEHCSLLGLDAELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLD 928


>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 491

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 501 RLNSPCIVITNHDSAFMPSIEVTDEQDPSKTK 596
           +LNS    +T H  A +P +EVTD  + S+ +
Sbjct: 87  KLNSSTS-LTTHQLASLPKLEVTDHDNVSEAE 117


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
           Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 165 NLPWYPGGFAWQLRLTRMD 221
           NLPWYP G++  L  T +D
Sbjct: 134 NLPWYPDGYS-PLDFTLLD 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,524,625
Number of Sequences: 5004
Number of extensions: 47709
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)