Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32135
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0480 + 17958726-17958926,17959294-17959382,17960176-179602... 187 6e-48
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210... 113 1e-25
02_05_0583 + 30128795-30129158,30129342-30129505,30129602-301296... 51 7e-07
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 45 5e-05
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277... 44 1e-04
08_02_0423 - 16946435-16946542,16946924-16947045,16947442-169475... 43 2e-04
02_02_0666 - 12757555-12757688,12757968-12758029,12758156-127582... 36 0.022
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468... 34 0.087
02_02_0076 + 6581428-6581695,6582247-6582305,6582481-6582531,658... 33 0.15
05_01_0428 - 3379116-3379262,3379357-3379537,3379690-3379785,337... 30 1.9
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 29 4.3
09_02_0185 - 5500208-5500711 28 5.7
>09_04_0480 +
17958726-17958926,17959294-17959382,17960176-17960242,
17960329-17960444,17960978-17961044,17961158-17961206,
17961630-17961715,17961825-17962078,17962158-17962213,
17962683-17962768,17963047-17963139,17963790-17964219,
17964338-17964861,17964962-17965190,17965271-17965566
Length = 880
Score = 187 bits (456), Expect = 6e-48
Identities = 86/171 (50%), Positives = 115/171 (67%), Gaps = 7/171 (4%)
Frame = +3
Query: 168 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPH 347
LPWYPG AW L +RM +RRN+AL H FL E G ++RQE VSM+PP+ L+V+P
Sbjct: 132 LPWYPGNLAWHLNFSRMQLRRNQALEGFHEFLKRENEVGNITRQEAVSMVPPLFLNVQPD 191
Query: 348 HKVLDMCAAPGSKTAQLIEFLH--ADEDKMPTGFVMANDVDNSRCYMLVHQAKRLNSPCI 521
H +LDMCAAPGSKT QL+E +H +P V+ANDVD RC +L+HQ KR+ + +
Sbjct: 192 HHILDMCAAPGSKTFQLLEMIHQSTKPGMLPNALVVANDVDVQRCNLLIHQTKRMCTANL 251
Query: 522 VITNHDSAFMPSIEV---TDE--QDPSKTKPLKFDRILCDVPCSGDATLRK 659
++TNH++ P + + E D SK + L+FDR+LCDVPCSGD T+RK
Sbjct: 252 IVTNHEAQNFPGCNLAKFSSETCTDESKLQRLEFDRVLCDVPCSGDGTVRK 302
>08_02_1046 -
23919990-23920183,23920251-23920479,23920624-23921057,
23921426-23921567,23922163-23922255,23923132-23923245,
23924181-23924266,23924458-23924506,23924717-23924783,
23925550-23925665,23925698-23925821,23926465-23926553,
23926810-23927061
Length = 662
Score = 113 bits (272), Expect = 1e-25
Identities = 46/86 (53%), Positives = 62/86 (72%)
Frame = +3
Query: 168 LPWYPGGFAWQLRLTRMDIRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPH 347
LPWYPG AW L +R +R+N+AL H FL E+ G ++RQE VSM+PP+ L+++P
Sbjct: 168 LPWYPGNLAWHLNFSRKQLRKNQALESFHEFLKHESEVGNITRQEAVSMVPPLFLNIQPD 227
Query: 348 HKVLDMCAAPGSKTAQLIEFLHADED 425
H VLDMCAAPGSKT QL+E +H ++
Sbjct: 228 HHVLDMCAAPGSKTFQLLEMIHQSKE 253
>02_05_0583 +
30128795-30129158,30129342-30129505,30129602-30129665,
30130082-30130215,30130369-30130452,30130580-30130654,
30130734-30130805,30130892-30130965,30131217-30131269,
30131388-30131497,30131824-30131892,30131975-30132049,
30132449-30132508,30132555-30132647,30132718-30132797,
30132877-30132976,30133153-30133590
Length = 702
Score = 51.2 bits (117), Expect = 7e-07
Identities = 34/130 (26%), Positives = 58/130 (44%)
Frame = +3
Query: 270 ETAAGGVSRQEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVM 449
E AG +Q S +P + L + +++DM AAPG KT + + TG +
Sbjct: 312 EYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALM------KNTGIIY 365
Query: 450 ANDVDNSRCYMLVHQAKRLNSPCIVITNHDSAFMPSIEVTDEQDPSKTKPLKFDRILCDV 629
AN+ + R + L+ R+ ++ N+D +P + + DR+L D
Sbjct: 366 ANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMN----------SVDRVLLDA 415
Query: 630 PCSGDATLRK 659
PC+G T+ K
Sbjct: 416 PCTGTGTIWK 425
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 45.2 bits (102), Expect = 5e-05
Identities = 34/121 (28%), Positives = 53/121 (43%)
Frame = +3
Query: 297 QEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRC 476
+E + + V+D +P ++D CAAPG KT + L G + A D++ R
Sbjct: 399 EESIVGLVVSVVDPQPGETIIDCCAAPGGKTLFMAARLSGQ------GKIWALDINKGRL 452
Query: 477 YMLVHQAKRLNSPCIVITNHDSAFMPSIEVTDEQDPSKTKPLKFDRILCDVPCSGDATLR 656
+L+ AK N ++ H + + E T FD++L D PCSG L
Sbjct: 453 RILMEAAKLHNLDAMISDIHADLRLYAKETT----------ATFDKVLLDAPCSGLGVLS 502
Query: 657 K 659
K
Sbjct: 503 K 503
>09_06_0199 +
21526872-21527250,21527431-21527594,21527673-21527736,
21528001-21528134,21528302-21528385,21528526-21528600,
21528683-21528754,21528852-21528925,21529185-21529282,
21529355-21529464,21529794-21529862,21529944-21530018,
21530519-21530611,21530690-21530769,21530877-21530976,
21531150-21531586,21531676-21531706,21532873-21533822,
21533982-21534201
Length = 1102
Score = 44.0 bits (99), Expect = 1e-04
Identities = 33/139 (23%), Positives = 60/139 (43%), Gaps = 9/139 (6%)
Frame = +3
Query: 270 ETAAGGVSRQEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFL-HADEDKMPT--- 437
E AG +Q S +P + L + +++DM AAPG KT + + + + +P
Sbjct: 317 EYMAGHYMKQGASSFLPVMALAPQEKERIVDMAAAPGGKTTYIGALMKNTGQCALPVFST 376
Query: 438 -----GFVMANDVDNSRCYMLVHQAKRLNSPCIVITNHDSAFMPSIEVTDEQDPSKTKPL 602
+ AN+ + R + L+ R+ ++ N+D +P + +
Sbjct: 377 FCSYRRIIYANEFNEKRLHGLLGNIHRMGVTNTIVCNYDGKELPKVLGMN---------- 426
Query: 603 KFDRILCDVPCSGDATLRK 659
DR+L D PC+G T+ K
Sbjct: 427 SVDRVLLDAPCTGTGTIWK 445
>08_02_0423 -
16946435-16946542,16946924-16947045,16947442-16947504,
16949707-16949844,16950062-16950170,16950610-16950934,
16952482-16952645
Length = 342
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = +3
Query: 222 IRRNEALYRLHNFLVAETAAGGVSRQEQVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQL 398
+ E +Y+L +F + G + Q S++ VLD +P ++LDMCAAPG KT +
Sbjct: 232 VEMTERVYKLPSF--NDVLEGEIFLQNLPSVVAARVLDPQPGERILDMCAAPGGKTTAI 288
>02_02_0666 -
12757555-12757688,12757968-12758029,12758156-12758223,
12758359-12758490,12759116-12759351,12759451-12759648,
12760123-12760213,12760566-12760710,12760837-12760955
Length = 394
Score = 36.3 bits (80), Expect = 0.022
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = +3
Query: 324 VVLDVKPHHKVLDMCAAPGSKTAQLIEFL 410
+ LDV+P VLD+CAAPG+K L + L
Sbjct: 101 LALDVQPGEHVLDLCAAPGAKLCMLADML 129
>02_01_0624 -
4681834-4682298,4684250-4684398,4684479-4684557,
4684827-4684925,4685004-4685081,4685231-4685288,
4685814-4685913,4686000-4686008,4686105-4686138,
4686729-4686911,4687099-4687126,4687268-4687380,
4688253-4688459,4689212-4689511
Length = 633
Score = 34.3 bits (75), Expect = 0.087
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 647 RVAGARYVAQYPVELQGLCFAWILFISYFNGRHESRVVVRDH 522
RVA A+Y+ +Y + +CF + +S +G+H + V DH
Sbjct: 91 RVAAAQYILEYVLSFSVVCFGGMTVLSLLSGQHGADVNAIDH 132
>02_02_0076 +
6581428-6581695,6582247-6582305,6582481-6582531,
6582766-6582898,6583533-6583618,6583955-6584008,
6584576-6584645,6585198-6585259,6585370-6585457,
6585645-6585728,6585820-6586028
Length = 387
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 303 QVSMIPPVVLDVKPHHKVLDMCAAPGSKTAQLIEFLHAD 419
+ S + V L +P KV+D CAAPG+KT L ++ +
Sbjct: 201 KASCMVAVALCPEPGWKVIDACAAPGNKTVHLAALMNGE 239
>05_01_0428 -
3379116-3379262,3379357-3379537,3379690-3379785,
3379886-3380034,3380120-3380392,3380895-3380983,
3381923-3382015,3382143-3382238,3382370-3382477,
3382917-3383208
Length = 507
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 6 TLKYNLPTAFRITGSKGEADALMKIVNSDYFSQLL 110
T+ YNLP + + S G+AD + +++S Y + L
Sbjct: 409 TMPYNLPESVSVHQSSGDADGRVPVISSRYCVEAL 443
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -1
Query: 383 RPRGSTHVKHLMVRFHI*YYGRYHRHLFLSRDSSCCSLCYKKVMKPIQCLVT 228
R S VK ++FHI + + R S+DS SLCY + + ++CL++
Sbjct: 106 RTSPSLAVKKDKIKFHILSHQKLSRS---SQDSDASSLCYLNMEQLMKCLLS 154
>09_02_0185 - 5500208-5500711
Length = 167
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 351 KVLDMCAAPGSKTAQLIEFLHADEDKMPTGFVMANDVDNSRCYMLVHQAKRLNSPCIV 524
KVLD C + A E + + ++ + DVDN+ + L+ A LN P ++
Sbjct: 63 KVLDYCKKHAAAAAAAAEDVAVKDQELKSFDASFIDVDNTMLFGLILAANYLNVPSLL 120
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,485
Number of Sequences: 37544
Number of extensions: 339555
Number of successful extensions: 858
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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