Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32131
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    27   2.9  
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy...    26   3.8  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    26   5.1  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    26   5.1  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    26   5.1  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.7  

>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 618 IVVIF-LGAGTDDISINFNRENIFEIRT 538
           IV +F LG GT DISI      +FE+R+
Sbjct: 236 IVAVFDLGGGTFDISILELNNGVFEVRS 263


>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 215

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +1

Query: 73  SPSSSNPLLATKGSTSKLTHRHSPLSFSPDLLSGSRFRSGGRFCEALLLLRSY 231
           S  SS+  L T+ +TS+    H   +     L+G+     GRFC A  L+  +
Sbjct: 131 SEKSSDKALLTRPATSRRRCCHPTCTRITLRLAGNCLHCNGRFCAAHRLMEDH 183


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 615 VVIF-LGAGTDDISINFNRENIFEIR 541
           V+IF LG GT D+S+    E IFE++
Sbjct: 193 VLIFDLGGGTFDVSLLTIEEGIFEVK 218


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 615 VVIF-LGAGTDDISINFNRENIFEIR 541
           V+IF LG GT D+S+    E IFE++
Sbjct: 193 VLIFDLGGGTFDVSLLTIEEGIFEVK 218


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 70  RSPSSSNPLLATKGSTSKLTH--RHSPLSFSPDLL 168
           R  SS+NP+  T   + +L H  RH P   +P L+
Sbjct: 266 RPASSTNPVHNTSSDSQRLNHQNRHLPDDSNPSLM 300


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 325 FRPVLLF*NQFSIFVCLLIRMCVFAI 402
           FRP + F N F +F+  L R+  FA+
Sbjct: 514 FRPFVGFKNSFCVFLVALTRVVSFAL 539


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,543,410
Number of Sequences: 5004
Number of extensions: 50977
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)