Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32131
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0151 - 25999366-26000044,26004820-26005637 31 0.56
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 29 2.3
04_04_0933 + 29495656-29496972,29497244-29497819,29499414-294996... 29 3.9
02_05_0213 + 26815889-26816475,26817718-26817788,26817985-268180... 28 5.2
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 28 6.9
06_02_0001 - 10431189-10432634 28 6.9
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 27 9.1
02_02_0537 + 11308195-11309667 27 9.1
01_05_0645 - 23899579-23904483 27 9.1
>05_06_0151 - 25999366-26000044,26004820-26005637
Length = 498
Score = 31.5 bits (68), Expect = 0.56
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 92 GFDEDGDRCLWYLKAPLMDREDPEMTY 12
G ++ G R LW ++AP++ DPE Y
Sbjct: 315 GLEKSGHRFLWVVRAPIVVNNDPEKPY 341
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Frame = +1
Query: 1 IALKYVISGSSRSINGAFRYHKHRSPSSSNP---LLATKGSTSKLTHRHSPLSFSPDLLS 171
+A V S SS + + + H P + P LL STS+L + H+ SP L
Sbjct: 208 LACHVVSSTSSIHTSASQMVNAHLFPPDNMPNGVLLDLNNSTSQLQNEHAKFVDSPARLF 267
Query: 172 GSRFR 186
GSR R
Sbjct: 268 GSRIR 272
>04_04_0933 +
29495656-29496972,29497244-29497819,29499414-29499650,
29499736-29500048,29500191-29500300
Length = 850
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +1
Query: 34 RSINGAFRYHKHRSPSSSNPLLATKGSTSKLTHRH--SPLSFSPDLLSGSRFR 186
R + A + R P SNP A + ++ L HR P D+L+ SR R
Sbjct: 10 RDLLAADGFRNRRKPPDSNPPAAPRTTSMPLQHRRPSRPARSQSDVLTRSRLR 62
>02_05_0213 +
26815889-26816475,26817718-26817788,26817985-26818073,
26818910-26818991,26819089-26819204,26819290-26819451,
26819531-26819680,26819969-26820037,26820375-26820491
Length = 480
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = +1
Query: 61 HKHRSPSSSNPLLATKGSTSKLTHRHSPLSFSPDLLSGSRFRSGGRF 201
HKH P N + TK SK + L DLL R S G F
Sbjct: 410 HKHVLPPFHNGVSLTKAVLSKYVDENQKLQQELDLLKKKRSSSDGGF 456
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 193 GRFCEALLLLRSYSIGCK*DSFLIKLYA 276
G C AL++L + I C S L+ +YA
Sbjct: 127 GSLCHALVVLNGFEINCYIGSSLVSMYA 154
>06_02_0001 - 10431189-10432634
Length = 481
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 92 GFDEDGDRCLWYLKAPLMDRED 27
G + G R LW LK ++DR+D
Sbjct: 309 GLEASGSRFLWILKTTVVDRDD 330
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 37 SINGAFRYHKHRSPSSSNPLLATKGSTSKLTHRHSPLSFSPDLLSGSRFRSGGRFC 204
+IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 986 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1040
>02_02_0537 + 11308195-11309667
Length = 490
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 37 SINGAFRYHKHRSPSSSNPLLATKGSTSKLTHRHSPLSFSPDLLSGSRFRSGGRFC 204
+IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 144 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 198
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 27.5 bits (58), Expect = 9.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 37 SINGAFRYHKHRSPSSSNPLLATKGSTSKLTHRHSPLSFSPDLLSGSRFRSGGRFC 204
+IN + H PSSS T T + H H P SF P + ++ ++ R C
Sbjct: 1263 NINNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRTQPKAPCRSC 1317
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,788,817
Number of Sequences: 37544
Number of extensions: 300000
Number of successful extensions: 690
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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