Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32129
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   169   4e-43
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   3.6  
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc...    25   8.4  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   8.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  169 bits (411), Expect = 4e-43
 Identities = 98/234 (41%), Positives = 125/234 (53%), Gaps = 1/234 (0%)
 Frame = +1

Query: 16  LDSGIIGNIFKTFNSSWNXGNPGII*L-GDDQIYNTIXTAHAXXXXXXXXXXXXXXXXXN 192
           L SGIIG++F +F        PG   L G+ Q+YN   +AH                  N
Sbjct: 29  LVSGIIGSVF-SFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGN 87

Query: 193 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 372
            LVPL++GAPD+A+PR+NN  F              + E G G G TVYPPLSS  +H G
Sbjct: 88  YLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSG 147

Query: 373 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFLLLLSLP 552
            ++DLAI SL L GISS                   S  Q+PLF  A+ IT+ LLLL+LP
Sbjct: 148 PAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMITSILLLLTLP 207

Query: 553 VFSWSYYNIINRSKLKIHHFFDPAGGGDPILYQHFILDFFGHPEVYILILPGFG 714
           V +   + + +   L    F+ P GGGDP+LYQH +  FFGHPEVYILI+P FG
Sbjct: 208 VLAGGLFMLFSDRNLNT-SFYAPEGGGDPVLYQH-LFWFFGHPEVYILIMPAFG 259


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 544 SLPVFSWSYYNIINRSKLKIHHFFDPAGGGDPI 642
           SLPVFS  Y +I N+  LK  + +DP     PI
Sbjct: 18  SLPVFSSQYSDIENKDVLK-SNSWDPYAANAPI 49


>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 431

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 547 LPVFSWSYYNIINRSKLKIHHFFDPAGGGDPILYQHFILDFFGH 678
           LP FSW    +I  S ++I    D A   DP  Y  F+     H
Sbjct: 42  LPTFSWHEGMLIPGSNMQISFVKDLATPRDPTSYFTFLNYLHSH 85


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 261 TPTPLPYIINFKKNCRKWCRNRMNS 335
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,501,293
Number of Sequences: 5004
Number of extensions: 43603
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)