Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32128
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   5.6  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   7.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   7.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   7.4  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   9.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = -2

Query: 614  SLPADWRI*KQQHNIIAGFRIFISERRVNEVHSQKPLPFDYYYE 483
            S+   WR   Q + +I  + ++       E  SQK  P    +E
Sbjct: 1195 SILVSWRPPSQPNGVITQYTVYTKADNAEEPTSQKVPPNQLTHE 1238


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = -3

Query: 586 NNNTISLPASEFSFPKEGSMKSILRNH 506
           NN     P    +FPK    ++++ +H
Sbjct: 71  NNQLFQTPCELLNFPKRSFSENMINDH 97


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 381 FEENNSQRNFSCRKNRFLLNLGEKIKI 301
           +  NN+  N +C+K  + +N  E+I I
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 381 FEENNSQRNFSCRKNRFLLNLGEKIKI 301
           +  NN+  N +C+K  + +N  E+I I
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 381 FEENNSQRNFSCRKNRFLLNLGEKIKI 301
           +  NN+  N +C+K  + +N  E+I I
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIPI 124


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 381 FEENNSQRNFSCRKNRFLLNLGEKIKI 301
           +  NN+  N +C+K  + +N  E+I +
Sbjct: 98  YNYNNNNYNNNCKKLYYNINYIEQIPV 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,373
Number of Sequences: 438
Number of extensions: 3107
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)