Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32127
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    32   0.048
SPBC215.11c |||aldo/keto reductase, unknown biological role|Schi...    25   5.6  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    25   5.6  
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch...    25   7.3  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    24   9.7  

>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 31.9 bits (69), Expect = 0.048
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +1

Query: 109 VPAVGEAGTMAQSTLGYLHGIASAPWYPQWAPCTTIGS 222
           +P++ E  T+  S LG+L G  S   Y  +AP T +G+
Sbjct: 469 LPSLDEVKTLMTSALGFLDGHGSVERYSWFAPATELGA 506


>SPBC215.11c |||aldo/keto reductase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 166 GIASAPWYPQWAPCTTIGSTCLDCTTKQV 252
           GIA  PWYP  +       T LD  +K +
Sbjct: 208 GIAFIPWYPLASGALAKPGTILDAVSKDL 236


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +1

Query: 190 PQWAPCTTIGSTCLDCT 240
           PQWA C      CLDC+
Sbjct: 25  PQWASCNLGIFICLDCS 41


>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
           ATPase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 726

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 100 PPVVPAVGEAGTMAQSTLGYLHGIASAPWYPQWAPCTTIGSTC 228
           P +V  + +AG+   S++ ++ GI S  +Y        +GS C
Sbjct: 176 PYIVGKILDAGSSGDSSVTHIMGIPSGTFYIGLLGLFFLGSAC 218


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 254 QTCLVVQSRQVLPMVVHGAHCGYQGADAIPW 162
           ++C V+Q +    M+  G H  Y G  A+P+
Sbjct: 50  RSCHVIQYKGKTVMLDAGVHPAYTGLSALPF 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,758,549
Number of Sequences: 5004
Number of extensions: 33645
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)