Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32127
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 32 0.25
11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534 29 1.8
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 29 1.8
04_02_0011 - 8513471-8513673,8513815-8513869 29 2.4
04_03_1049 + 22015053-22015083,22015770-22015885,22016013-220161... 28 3.1
11_03_0107 + 10084234-10084348,10084830-10084834,10085351-100858... 27 5.5
04_03_0686 + 18701543-18701917,18702658-18702702,18703175-187032... 27 7.3
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 9.6
07_03_0398 - 17690979-17690998,17691034-17691446,17691709-176917... 27 9.6
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 27 9.6
05_04_0258 + 19490256-19491569 27 9.6
04_04_0144 - 23095172-23095830,23095915-23097265 27 9.6
02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311... 27 9.6
01_03_0121 - 12722492-12722920 27 9.6
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 31.9 bits (69), Expect = 0.25
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -1
Query: 213 GGARSPLRVPGSGCDPMEVSKG*LRHCSSLPNRRHHRWQ 97
GGA L++PGSGC M++ + +RRHHRW+
Sbjct: 290 GGAGEGLKLPGSGCSAMKM-------LFAEWSRRHHRWR 321
>11_04_0117 + 13610168-13610752,13622181-13622240,13622241-13622534
Length = 312
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Frame = +1
Query: 127 AGTMAQSTLGYLHGIASAPWYPQWAPCTTI-----GSTCLDCTTKQVCTKVGGIQRACLD 291
A T ++S+ +LHG+ PW PC + +T + K++ G+ LD
Sbjct: 4 AQTKSKSSKDFLHGVIVEPWPGAAVPCGRVQLFRPNTTFVSAAEKKLVAAAAGLPSELLD 63
Query: 292 PTLPYC 309
C
Sbjct: 64 VKATVC 69
>11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 29.1 bits (62), Expect = 1.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 245 LVVQSRQVLPMVVHGAHCGYQGADAI 168
L ++ RQ P+V+HG C ++G D I
Sbjct: 1234 LKIKYRQDAPLVLHGITCTFEGGDKI 1259
>04_02_0011 - 8513471-8513673,8513815-8513869
Length = 85
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 199 APCTTIGSTCLDCTTKQVCTKVGGIQRACLDPT-LPYCNLGECSATP 336
AP T + C+D T K +C+ + C L YCN C+ +P
Sbjct: 33 APITEVPKPCVDATCKAICSDKYQSKGECFSTDGLYYCNF--CANSP 77
>04_03_1049 +
22015053-22015083,22015770-22015885,22016013-22016108,
22016229-22016285,22016468-22016620,22016754-22016838,
22017097-22017187,22017324-22017488,22017813-22017932,
22018020-22018104,22018234-22018402,22019055-22019173,
22019250-22019440,22019746-22019957,22020905-22021500,
22022538-22022658,22023439-22023868,22024412-22024797,
22024976-22025071,22025380-22025432,22026915-22027061,
22027139-22027309,22027880-22027962,22028049-22028247,
22028668-22028789,22029752-22029818,22029960-22030010,
22030768-22031001,22031263-22031451,22032455-22032646,
22032742-22032936
Length = 1673
Score = 28.3 bits (60), Expect = 3.1
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 116 RLGRLEQWRSQPLDTSMGSHPLPGTRSGLRAPPSVVLA*IALPSKF 253
R R+ W +PLD S P P R+ PP+ LP F
Sbjct: 344 RPDRVSPWELEPLDASNPQPPQPPLRNKRARPPASPSVVAELPPSF 389
>11_03_0107 +
10084234-10084348,10084830-10084834,10085351-10085803,
10086143-10086267,10087282-10087345,10087452-10087508,
10088475-10088485,10089923-10090802
Length = 569
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = +1
Query: 235 CTTKQVCTKVGGIQRA--CLDPTL--PYCNLGECSATPAEXCEPASGASVA 375
C+T + T +G I A P+L P CN +A + CEP GA+++
Sbjct: 31 CSTVEQATGLGYIVLALQAYTPSLHPPPCNPAATTAAASTTCEPVRGANLS 81
>04_03_0686 +
18701543-18701917,18702658-18702702,18703175-18703289,
18703644-18703713,18703796-18703844,18704319-18704416,
18704984-18705122,18705261-18705410
Length = 346
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Frame = +1
Query: 103 PVVPAVGEAGTMAQSTLGYLHGIASAP--WYPQWAP 204
P PA G G A+ L ++HG A W W P
Sbjct: 73 PPAPATGGGGAAARPPLVFVHGSFHAAWCWAEHWLP 108
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 26.6 bits (56), Expect = 9.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +2
Query: 5 NETCILSIKMVSKVIIALSHHASSSFGCPSTCHRWCRRLGRLE 133
++ C+L ++V +S+H S+ P H C+R RL+
Sbjct: 396 SDVCLLVGMRTTEVTAKVSYHNYSTVQAPEGVHCVCKRFPRLK 438
>07_03_0398 -
17690979-17690998,17691034-17691446,17691709-17691764,
17691922-17692054,17694244-17694403,17694862-17694955,
17695791-17695928,17696017-17696174,17696729-17696810,
17697055-17697151,17698703-17698824,17699833-17699910,
17700437-17700565,17701301-17701531
Length = 636
Score = 26.6 bits (56), Expect = 9.6
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Frame = +1
Query: 157 YLHGIASAPWYPQWAPCTTIGSTCLDC-TTKQVCTKVG--GIQRACLDPTLPYCNLGECS 327
Y H A WAP + S +D ++ T VG G+Q T N G
Sbjct: 488 YTHACRGAGLDSSWAPPWS--SPGMDNPSSSSAVTSVGLSGVQMMMRQLTSVTDNYGHPD 545
Query: 328 ATPAEXCEPASGASVAPTA 384
AT + EP +G+SV P++
Sbjct: 546 ATWSLWPEPVAGSSVVPSS 564
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/55 (23%), Positives = 24/55 (43%)
Frame = +1
Query: 202 PCTTIGSTCLDCTTKQVCTKVGGIQRACLDPTLPYCNLGECSATPAEXCEPASGA 366
P ++ +D T +C + G + P + +C++ + A P E SGA
Sbjct: 563 PFLSLAGGNIDVGTGSICFHING--KFEFQPRMEHCSMNQVRAKPVEYSRVRSGA 615
>05_04_0258 + 19490256-19491569
Length = 437
Score = 26.6 bits (56), Expect = 9.6
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Frame = +1
Query: 196 WAPCTT--IGSTC--LDCTTKQV-CTKVGGIQRACLDPTLPYCNLGECSATP 336
W C T + S+ + C +K TK GG +C P C G CS P
Sbjct: 73 WVDCDTGYVSSSYARVPCGSKPCRLTKTGGCFNSCFGAPSPACLNGTCSGFP 124
>04_04_0144 - 23095172-23095830,23095915-23097265
Length = 669
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 104 RWCRRLGRLEQWRSQPLDTSMGSHP 178
RW R + R E+W S+ DT + HP
Sbjct: 578 RWARSVVR-EEWTSEVFDTELLRHP 601
>02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,
3110157-3111444
Length = 1821
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Frame = +1
Query: 100 PPVVPAVGEAGTMAQSTLGYLHGIASAPWYPQWAPCTTIGSTC-LDCTTKQVCTKVGGIQ 276
PP + + + S+L +AS W CT G TC D T ++ G++
Sbjct: 1137 PPAPAQIRRRASSSSSSLASRRTVASPSWQNDTDCCTWEGITCGTDATITEISLASKGLE 1196
>01_03_0121 - 12722492-12722920
Length = 142
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 143 SQPLDTSMGSHPLPGTRSG 199
++P + S GS+PLP +RSG
Sbjct: 51 TEPQEGSSGSNPLPSSRSG 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,462
Number of Sequences: 37544
Number of extensions: 277199
Number of successful extensions: 857
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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