Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32127
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical pr...    27   6.6  
U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z37092-4|CAA85455.1|  890|Caenorhabditis elegans Hypothetical
           protein F44F4.4 protein.
          Length = 890

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 101 HRWCRRLGRLEQWRSQPLDTSMGSH 175
           H W     RLE WR+ PLD  M  H
Sbjct: 350 HAW----NRLESWRTAPLDKPMREH 370


>U39644-2|AAA80360.2|  966|Caenorhabditis elegans Hypothetical
           protein T10E10.4 protein.
          Length = 966

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 232 DCTTKQVCTKVGGIQRACLDPTLPYCNLGECSATPAEXCEPASGAS 369
           +C     CT +GG     ++P  P  +   C  +P   C   SGAS
Sbjct: 693 ECPPGYGCTPLGGCCLLSMEPVCPTRSNAVCQCSPNNVC--PSGAS 736


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,051,741
Number of Sequences: 27780
Number of extensions: 205465
Number of successful extensions: 507
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)