Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32126
         (542 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier ...    36   0.005
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    30   0.25 
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    29   0.34 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    29   0.44 
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    27   1.4  
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch...    27   1.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    27   1.8  
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5...    27   2.4  
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    27   2.4  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    27   2.4  
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang...    26   3.1  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   3.1  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    26   3.1  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    25   5.5  
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual      25   7.2  
SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces...    25   9.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   9.5  
SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|c...    25   9.5  
SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce...    25   9.5  

>SPAC17A2.01 |bsu1|SPAC1B1.05, bsu1|high-affinity import carrier for
           pyridoxine, pyridoxal, and pyridoxamine
           Bsu1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 5/166 (3%)
 Frame = +3

Query: 48  WVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGMLLSFFGGPL 227
           W I F + L  + V+   + FG +      +  ++    TL + +N     L   F GPL
Sbjct: 81  WSIVFMFCLMQIYVIWTSNGFGSIEYSVMAQFNVSAQVATLCLSMNILGSGLGPMFLGPL 140

Query: 228 LRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILNSMGVASVMAAFTLAINSFF 407
               G + V      + +   I  +L  +    I+S+ I+   G ++ +      I   F
Sbjct: 141 SDIGGRKPVYFCSIFVYTVFNISCALPRNIVQMIISHFIIGVAG-STALTNVAGGIPDLF 199

Query: 408 KEKRSTAIGVGMSV----TGLGAIYMPLLMSTLIYA-YGWRYAVLI 530
            E   TA GV MS+       GAI  P+     I A YGWR+   I
Sbjct: 200 PE--DTA-GVPMSLFVWACAGGAIGAPMATGVDINAKYGWRWLYYI 242


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +3

Query: 159 QGTLVIILNH--SIGMLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFIL 332
           QG LV ++N   ++G LLS    PL  RFG RK      ++   G+I+       WV ++
Sbjct: 58  QGLLVGMVNTGTTVGCLLS---SPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMM 114

Query: 333 SYSILNSMGVASV 371
              I   +G+ ++
Sbjct: 115 VAKIWTGLGIGAL 127


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +3

Query: 351 SMGVASVMAAFTLAINSFFKEKRSTAIGVGMSVTGLGAIYMPLLMSTLIYAYGWRY 518
           S   A  +  F+++   FF+ +R   IG+ +  T +G    PL    +  + GWR+
Sbjct: 160 SEACAEALTQFSVS-EVFFEHERGIKIGIYILSTSVGTYLGPLAAGYIASSQGWRW 214


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +3

Query: 210 FFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILN--SMGVASVMA 377
           F   PL+ R G R       I+   G+IL   A   WV I+   I    S+G  SV+A
Sbjct: 74  FLSSPLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLSIGALSVLA 131


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 466 IAPSPVTDMPTPIAVLRFSLKN 401
           I+ SPVTDM  P+  L  S++N
Sbjct: 587 ISVSPVTDMDAPVPTLNSSIRN 608


>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 295

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 441 MSVTGLGAIYMPLLMSTLIYAYGWRYAV 524
           +S+ GLG I MP LM  L+Y +   Y +
Sbjct: 183 LSMLGLGDIVMPGLMLALMYRFDLHYYI 210


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 39  GYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHS 191
           GY     FA++ + +VV+   S+FG    E   ET +      LVI++N++
Sbjct: 427 GYAIASAFAHSSDKIVVVEGDSAFGFSAMEL--ETAIRNQLDLLVIVINNN 475


>SPBC609.04 |caf5||spermine family transmembrane transporter
           Caf5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 34/166 (20%), Positives = 67/166 (40%), Gaps = 3/166 (1%)
 Frame = +3

Query: 54  ITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLVIILNHSIGMLLSFFGGPL-- 227
           +TFA  + + +  P IS      QE      +    G  + +L ++IG L+     PL  
Sbjct: 92  LTFAVYVGSAIFTPGISEM----QETMHVGTVPVVLGLTLFVLGYAIGPLIL---SPLSE 144

Query: 228 LRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILNSMGVASVMAAFTLAINSFF 407
           + + G +K+  +  ++     I T+L SS  V +    +    G +  +A     +   +
Sbjct: 145 IPQVGRQKIYVLSLLVFVCLQIPTALGSSLGVLLPMRFLAGFFG-SPALATGGATLADIW 203

Query: 408 KEKRSTAIGVGMSVTGLGA-IYMPLLMSTLIYAYGWRYAVLILSAI 542
           +           ++  +G  +  PLL   ++ A  WR+   +L  I
Sbjct: 204 QPWLLPYFMCFWAIGAIGGPVLGPLLGGAMVVAESWRWQFWLLMMI 249


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 20/82 (24%), Positives = 44/82 (53%)
 Frame = +3

Query: 270 ILISAGLILTSLASSFWVFILSYSILNSMGVASVMAAFTLAINSFFKEKRSTAIGVGMSV 449
           ++I A  +++ + +   V I ++S++ +  +A V+AAF++ I        +T  GV  ++
Sbjct: 168 LIIKALPLISMVIAWVGVVIAAFSVIITATIAGVIAAFSVIIT-------ATIAGVIAAM 220

Query: 450 TGLGAIYMPLLMSTLIYAYGWR 515
            G+      L+   LI A+G++
Sbjct: 221 VGILYFGHWLVYKILILAFGFK 242


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
          8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 68 IGECDDPSVSSVWRHLVRR 12
          +G CD  SV  +WR  V+R
Sbjct: 32 LGTCDQDSVHDLWRRFVKR 50


>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
           factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +3

Query: 12  PAYKVPPDGGYGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLTPTQGTLV 173
           P  +  PD  Y  V  FAY   +   +   S F ++F++  +ET   PT+ +++
Sbjct: 708 PLEEFSPDTSYSLVNAFAYCDRDKKNVRNCS-FTVIFRDGSEETLCAPTEESMI 760


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 42  YGWVITFAYALNNVVVLPLISSFGLVFQEAFDETGLT 152
           + WV TF   +    VLP+++ + +   EA  + G T
Sbjct: 327 FNWVHTFRLRIYGPAVLPMLALYIVNMMEAIGDIGAT 363


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 445 DMPTPIAVLRFSLKNELIANVNAAITEATPIEF 347
           + P PI +    ++ E +  +N  + E TPIEF
Sbjct: 272 EFPFPIIIADNVIEGETVIPLNDTVFEFTPIEF 304


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +3

Query: 159 QGTLVIILNHSIGMLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSY 338
           QG +  ++N    M       PL+ R G R       I+   G+IL   A   WV I+  
Sbjct: 58  QGLITGMVNVG-SMTGCILSSPLMDRIGKRVSIMFWTIVYLIGIILQVTAVPSWVQIMVA 116

Query: 339 SILN--SMGVASVMA 377
            I    ++G  SV+A
Sbjct: 117 KIWTGLAIGALSVLA 131


>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 226 NGPPKNDNNIPIL*LSIITKVPCVGVK-PVSSNASWNTRPKLLMRGRTT 83
           N  P NDNN  I  LSI +  P +     V S AS    P +    RTT
Sbjct: 100 NNIPPNDNNYSISDLSIKSPPPSLTSDWIVDSYASDQDNPSVHTHNRTT 148


>SPCC320.11c ||SPCC330.18|RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 180

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 266 GYTYLRWTHINEFSI*FLGLHFIVQYSKFNGCSFSNG 376
           G  + ++T  N+F +    L +I QY+++     SNG
Sbjct: 67  GICFGKFTKTNKFRLHITALDYIAQYARYKIWVKSNG 103


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 430 IAVLRFSLKNELIANVNAAITEATP 356
           +A   F++KN +  +VN  IT ATP
Sbjct: 269 VAQATFTMKNYVDGSVNTLITLATP 293


>SPCC663.02 |wtf14||wtf element Wtf14|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 222

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = +3

Query: 312 SFWVFILSYSILNSMGVASVMAAFTLAINSFFKEKRSTAIGVGMSVTGLGAIYMPLLMST 491
           S W+ + +Y       +  V+ A    I SF +++    +   + +T + A  +PLLM  
Sbjct: 113 SMWLLLATYETW-FRSIKEVIVACGAGIRSFPQKRGVNMLYAILKLTFVNAFAIPLLMFF 171

Query: 492 LIYAYGWR 515
             +   WR
Sbjct: 172 RSHFEQWR 179


>SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 253 TFRYPNRRSNGPPKNDNNIPIL 188
           TFRY  RR+NG    +  +P++
Sbjct: 340 TFRYLKRRNNGKMAPEFRVPVI 361


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,275,714
Number of Sequences: 5004
Number of extensions: 47158
Number of successful extensions: 116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 223909422
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)