Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32126
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 42 4e-04
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 34 0.064
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 31 0.45
07_03_0898 - 22403337-22404950 30 1.0
07_03_0899 + 22421038-22422642 29 2.4
12_02_1110 + 26154024-26154314,26154400-26154944,26155023-261551... 29 3.2
07_03_1019 + 23337543-23337697,23338315-23338384,23338555-233387... 28 4.2
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 28 4.2
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110... 28 5.5
01_01_0469 - 3456067-3456123,3456414-3456565,3456649-3456779,345... 28 5.5
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413 27 9.7
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 27 9.7
03_01_0626 + 4596022-4596462,4596549-4596667,4596745-4596801,459... 27 9.7
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 41.5 bits (93), Expect = 4e-04
Identities = 30/104 (28%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Frame = +3
Query: 195 GMLLS-FFGGPLLRRFGYRKVAAVGAILISAGLILT--SLASSFWVFILSYSILNSMGVA 365
G L+S GG L+ +G ++V A G L S L+ + A S W+F+ + +L
Sbjct: 146 GYLVSPIIGGALVDYYGGKRVMAYGVALWSLATFLSPWAAARSLWLFLSTRVLLGMAEGV 205
Query: 366 SVMAAFTLAINSFFKEKRSTAIGVGMSVTGLGAIYMPLLMSTLI 497
++ + + + F + +RS+A+G+ M+ LG + LL+S +I
Sbjct: 206 ALPSMNNMVLRWFPRTERSSAVGIAMAGFQLGNT-IGLLLSPII 248
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 34.3 bits (75), Expect = 0.064
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +3
Query: 198 MLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWV-FILSYSILNSMGVASVM 374
+L GG RFG + V G + S +LT LA+ + F+L +G M
Sbjct: 232 LLTQILGGIWADRFGGKVVLGFGVVWWSIATVLTPLAAKIGLPFLLVMRAFMGIGEGVAM 291
Query: 375 AAFTLAINSFFK-EKRSTAIGVGMSVTGLGAIYMPLLMSTLIYAYGW 512
A ++ + +RS ++ + S LG++ LI +GW
Sbjct: 292 PAMNNILSKWVPVSERSRSLALVYSGMYLGSVTGLAFSPLLISRFGW 338
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 31.5 bits (68), Expect = 0.45
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Frame = +3
Query: 252 VAAVGAILISAGLILTSLASSFWVFILSYSILNSMGVAS----VMAAFTL----AINSFF 407
V +G L A ++ TS F + IL + + + A+FT+ A +
Sbjct: 394 VDRIGRKLSMASMLFTSCVFLFPLIFSRTDILTRVSLFGARLCISASFTIVYIYAPEIYP 453
Query: 408 KEKRSTAIGVGMSVTGLGAIYMPLLMSTLIYAYGWRYAVLILSAI 542
R+T IGV SV +G I PL+ L+++ A+L+ +
Sbjct: 454 TSVRTTGIGVASSVGRIGGILCPLVAVALVHSCQQTTAILLFELV 498
>07_03_0898 - 22403337-22404950
Length = 537
Score = 30.3 bits (65), Expect = 1.0
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Frame = +3
Query: 240 GYRKVAAVGAILISAGLILTSLASSFWVFILSYSILNSMGVASV-MAAFTLAINSFFKEK 416
G RK+ + +S +LT+ + + WV+ + ++ G + V +A L+ K
Sbjct: 146 GRRKMLVLSLATMSVAGVLTAFSPNVWVY-AALRFVSGFGRSMVGTSAMVLSTELVGKWW 204
Query: 417 RSTAIGVGMSVTGLGAIYMPLLMSTLIYAYGWR 515
R+T G + +G + +P L TL A WR
Sbjct: 205 RNTVSVAGFVLFSVGFMSLPALAYTLREA-SWR 236
>07_03_0899 + 22421038-22422642
Length = 534
Score = 29.1 bits (62), Expect = 2.4
Identities = 26/107 (24%), Positives = 43/107 (40%)
Frame = +3
Query: 195 GMLLSFFGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILNSMGVASVM 374
G LL+ LL G RK+ + + +S +LT + + WV+ + +
Sbjct: 142 GFLLTTLADTLL---GRRKMLVLSLVTMSVAGVLTVFSPNVWVYAALRFVCGFCRSTAGT 198
Query: 375 AAFTLAINSFFKEKRSTAIGVGMSVTGLGAIYMPLLMSTLIYAYGWR 515
+A L+ K R+T +G + +P L TL A WR
Sbjct: 199 SAMVLSTELVGKWWRNTVSVAAFVFFSVGFMSLPALAYTLREA-SWR 244
>12_02_1110 +
26154024-26154314,26154400-26154944,26155023-26155109,
26155237-26155293,26155369-26155607,26155715-26155833,
26155945-26156031,26156117-26156194
Length = 500
Score = 28.7 bits (61), Expect = 3.2
Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +3
Query: 174 IILNHSIGMLLSF---FGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSI 344
++L + ++++F + GP LR G A L + GL+ LA F +F
Sbjct: 128 LVLQFATAIVIAFLYWYAGPFLRLIGQAADVAAAGQLYARGLVPQLLA--FALFCPMQRF 185
Query: 345 LNSMGVASVMAAFTLAINSF 404
L + + + +A T+A+ F
Sbjct: 186 LQAQNIVNPVAYITMAVLIF 205
>07_03_1019 +
23337543-23337697,23338315-23338384,23338555-23338740,
23339006-23339080,23339161-23339240,23339357-23339483,
23340608-23340667,23341926-23341976,23342048-23342206,
23342528-23342660,23343097-23343166,23343516-23343570
Length = 406
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 138 ETGLTPTQGTLVIILNHSIGMLLSFFGGPLLRRFGYRKV-AAVGAILIS 281
+ GL+P+ +V++ + F G L+ RFG+ K+ A G+IL++
Sbjct: 46 DIGLSPSDAAVVMLSGQLADGFATIFVGELIDRFGHFKLWHAGGSILVA 94
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 28.3 bits (60), Expect = 4.2
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 213 FGGPLLRRFGYRKVAAVGAILISAGLILTSLASSFWVFILSYSILN-SMGVASVMAAFTL 389
FGG + +FG + + L AG ++ +LA + +V I+ + +G+AS+ A +
Sbjct: 85 FGGWMNDKFGRKPSILIADSLFLAGALIMALAPTPFVIIIGRIFVGLGVGMASMTAPLYI 144
Query: 390 AINSFFKEKRSTAIGVGMSVTG 455
+ S + + + G+ +TG
Sbjct: 145 SEASPARIRGALVSTNGLLITG 166
>09_01_0076 +
1105331-1105453,1106559-1106705,1107046-1107195,
1107272-1107531,1107897-1108084,1108187-1108311,
1108485-1108521,1108802-1108893,1109023-1109133,
1109242-1109352,1109576-1109669,1109833-1109945,
1110316-1110411,1110510-1110617,1110665-1110814,
1110910-1110990,1111205-1111276,1111553-1111646,
1111759-1111787,1111870-1111967,1112065-1112160,
1112399-1112620,1113002-1113158,1113472-1113627,
1113703-1113930
Length = 1045
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 346 RILYDKMKTQKLDAKLVNMSPAEISIAPTAATFRYPNRRSN 224
R+L D + + +SPA+I+ T T +Y NR N
Sbjct: 328 RLLQDSLGGNSKTVMIACISPADINAEETLNTLKYANRARN 368
>01_01_0469 -
3456067-3456123,3456414-3456565,3456649-3456779,
3456846-3458036,3458460-3458541,3458947-3458984,
3459091-3459250,3459356-3459557,3460245-3460329,
3460809-3460863,3461230-3461325,3461807-3461940,
3462031-3462043,3462315-3462419,3462935-3463121
Length = 895
Score = 27.9 bits (59), Expect = 5.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 241 PNRRSNGPPKNDNNIPIL*LSIITKVPCVGVKPVSSNAS 125
P S+GP DN +P L ++++ P G+K ++S S
Sbjct: 54 PISHSSGPETVDNVVPPLDCTLLSASPIEGLKKITSACS 92
>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
Length = 451
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 400 RSSRKNEVQQSVSACQSQDLEQFT 471
+++R+ +QQ +ACQ+QD +Q T
Sbjct: 211 KAARRKNMQQQPTACQAQDEQQET 234
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 231 RRFGYRKVAAVGAILISAGLILTSL 305
RR+GYR+VA A+ + A ++L+++
Sbjct: 5 RRWGYRRVAVALAVCVHAAVLLSAV 29
>03_01_0626 +
4596022-4596462,4596549-4596667,4596745-4596801,
4596921-4597159,4597261-4597379,4597488-4597574,
4597673-4597720
Length = 369
Score = 27.1 bits (57), Expect = 9.7
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +3
Query: 321 VFILSYSILNSMGVASVMAAFTLAINSFFKEKRSTAIGVG----MSVTGLGAIYM-PLLM 485
+F S +L+++ SV+ AFT+ +NS A+G G ++ +G Y+ + M
Sbjct: 253 IFTSSDVVLDAVDNLSVLLAFTILLNSIQPVLSGVAVGSGWQSMVAYVNIGTYYLIGIPM 312
Query: 486 STLIYAYGWRYAVLIL 533
L+ GW + + +L
Sbjct: 313 GILL---GWLFKLGVL 325
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,773,704
Number of Sequences: 37544
Number of extensions: 300499
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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