Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32119
(660 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 149 5e-37
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po... 37 0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.19
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 4.2
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 7.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.3
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 25 7.3
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 7.3
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 9.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 9.7
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos... 25 9.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 9.7
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 149 bits (360), Expect = 5e-37
Identities = 67/160 (41%), Positives = 98/160 (61%), Gaps = 1/160 (0%)
Frame = +3
Query: 75 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 254
+L ++++ +D+ KD + L AV+IPSVS DV R + M ++ + ++GA E R
Sbjct: 2 SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61
Query: 255 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 431
D+G+ +DG+DV NDP K TV IY H DVQPA DGW T+PF L V+
Sbjct: 62 DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121
Query: 432 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNFEVHF 551
+++GRG+TDDKGP++GW+ I A+K G + PVN + F
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCF 161
>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 596
Score = 36.7 bits (81), Expect = 0.003
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 351 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 497
+ GH DV P ++ D W PF N +Y RG+ DDK V+ L +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.19
Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
Frame = -3
Query: 487 SQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFFGSLPNTPT 308
S T S +P S S++S S S A +S I + S ++PT
Sbjct: 227 SSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSI--ISSSSSSSSSPT 284
Query: 307 KTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 137
T + +S S PTS +S ++ +S + S T+ M S+ F+S T +T S
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -1
Query: 378 QVVHPNDHRYKLYFFLDHYPIR 313
++V P D + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 367 MYNLH*NLMDGRLNLLN*LSAMKNYMEEVLLM 462
+YN + N RLN A+KNYMEE+ L+
Sbjct: 435 LYNFNGNANPSRLN-----PALKNYMEELKLL 461
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 435 FHCAQLVQKVQSPIHQISMQVVHPNDHR 352
FH + + + IH+I +Q VH DH+
Sbjct: 796 FHWSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 448 LPYNFSLRSTSSKGSVSHPSDFNAGCTSK*P*IQTVFFF 332
L Y L ST+ + S+S S FN + + I+T+ FF
Sbjct: 406 LRYTNDLASTNKRFSLSEASSFNVWSSVRKRAIETIEFF 444
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/37 (37%), Positives = 17/37 (45%)
Frame = +3
Query: 330 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 440
P + I DV+P LKS + P E R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -1
Query: 393 HQISMQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERLCHLLFESQHPL 250
H+I+M +V ++ F + R + L +E L +F+S HPL
Sbjct: 381 HEINMLLVDLLLEPLQVAFVYKNLARRWISLEEIENLWLKVFDSSHPL 428
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 404 SLPSIRFQCRLYIQMTIDTNCIFFW 330
SLPS+R C+LY ++I + F W
Sbjct: 4083 SLPSVRLACQLY-GVSIQSLVFFTW 4106
>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
5-trisphosphate3-phosphatase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -1
Query: 342 YFFLDHYPIRLLKLAAVERLCHLLFESQHPLTL 244
Y F DH P LL L A+ LF++Q LTL
Sbjct: 93 YGFQDHNPPPLLFLWAIVMNMDALFQTQPLLTL 125
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 9.7
Identities = 34/139 (24%), Positives = 60/139 (43%)
Frame = -3
Query: 544 TSKLTGSSAPVPL*ALMVCSQPSTGPLSSVEPLPYNFSLRSTSSKGSVSHPSDFNAGCTS 365
TSK+T SS +PL + ++ ST SS + + S +TSS S S F + T+
Sbjct: 630 TSKVT-SSTSIPLTST---NRTSTTFTSSTS-ISTSSSSTATSSTSFASESSSFYSNVTT 684
Query: 364 K*P*IQTVFFFGSLPNTPTKTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TIRMQS 185
+ T S P+T T + + +SL SI T + + + + + S
Sbjct: 685 SSSTVSTPPPTTSFPSTFTTSFITSSSLSSIPNNSTEVKTASTSSGTEIKTASTSSGSSS 744
Query: 184 ARYFTSHETDGMATASFNN 128
+ +T + T+S ++
Sbjct: 745 SSSYTPASSTSTTTSSVSS 763
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,445
Number of Sequences: 5004
Number of extensions: 63834
Number of successful extensions: 197
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -