Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32116
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 27 0.73
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 0.73
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 2.2
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 25 3.0
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 3.0
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 25 3.0
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 25 3.0
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha... 25 3.0
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 3.9
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 24 5.2
SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|ch... 24 5.2
SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 24 6.8
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 24 6.8
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 23 9.0
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 27.1 bits (57), Expect = 0.73
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 268 PSLLHPKNVVAIKDSLISFIXRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTY 107
P+ LHP + + L+S R G + HIH +PYK Y
Sbjct: 530 PNKLHPYSGKPVSYKLVSRETPRLMARPGSLVSNRAGFARHHIHVTPYKDGQIY 583
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 0.73
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 214 FIXRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTYF 104
F+ L S + G R HSNS IH S + NT +
Sbjct: 60 FVKSLASKKYGAHLGRFTHHSNSLIHASTKEDNTVRY 96
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -2
Query: 175 ARRGDTHSNSHIHTSPYKGNTTYFFSNNKI 86
+RR + ++ SHI S + TY+++NN++
Sbjct: 357 SRRNENYA-SHIPRSTSENTGTYYYANNRL 385
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 27 SQTKYLYDKTNYVCVCVYLFILLLEKKYVVFPLYGLVC 140
S+ K+ Y++ + V + I L Y PLY L C
Sbjct: 559 SRDKFHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFC 596
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 25.0 bits (52), Expect = 3.0
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 190 REGEGARRGDTHSNSHIHTSPYKGNTTYFFSN--NKINK*TH 71
R R+G S+S++ +SP GN+ F+ N +++ TH
Sbjct: 570 RSANMIRQGANGSDSNMSSSPVSGNSNTPFNKFPNSVSRNTH 611
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 25.0 bits (52), Expect = 3.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 328 NSSEHLSFKXEIHNRMSYIFPSLLHPKNVVAIKDSL 221
N+ + LSF N Y + +LLHP+N + ++ +
Sbjct: 458 NTCDSLSFSS---NNSLYGYSTLLHPRNPICVRQRI 490
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 27 SQTKYLYDKTNYVCVCVYLFILLLEKKYVVFPLYGLVC 140
S+ K+ Y++ + V + I L Y PLY L C
Sbjct: 559 SRDKFHYNQRTTIYYLVAISIFALGLTYAAVPLYRLFC 596
>SPAC1142.06 |get3||GET complex ATPase subunit Get3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 3.0
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 48 DKTNYVCVCVYLFILLLEKKYVV 116
D T +VCVC+ F+ L E + ++
Sbjct: 220 DLTTFVCVCISEFLSLYETERMI 242
>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 3.9
Identities = 11/57 (19%), Positives = 25/57 (43%)
Frame = -2
Query: 256 HPKNVVAIKDSLISFIXRLTSPREGEGARRGDTHSNSHIHTSPYKGNTTYFFSNNKI 86
H + + ++ L +F R+ +G+ T ++ T P + ++ +NKI
Sbjct: 92 HKRRIKRFRNLLKTFACRIERANDGDHQAIWQTLRYAYSQTGPLRHRRLHYLQDNKI 148
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 5.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 298 EIHNRMSYIFPSLLHPKNVVAIKDSLIS 215
E + S + PS PK+ AIKD LIS
Sbjct: 566 ETESDASILSPSAAIPKSGSAIKDELIS 593
>SPAC25B8.17 |||peptidase family A22|Schizosaccharomyces pombe|chr
1|||Manual
Length = 295
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/51 (23%), Positives = 22/51 (43%)
Frame = +3
Query: 69 VCVYLFILLLEKKYVVFPLYGLVCICELECVSPRLAPSPSRGLVKRXINEI 221
V +YL + L K+Y+ L G + + C P + G + ++ I
Sbjct: 50 VLMYLALRYLSKEYIQLILQGYASLASIICFVRSFNPKTTFGKITATMSSI 100
>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 23.8 bits (49), Expect = 6.8
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Frame = +3
Query: 42 LYDKTNYVCVCVYLFILLLEKKYVVFPLYGLVC----ICELECV 161
LY K + VC+ F V +PLY +VC +C L C+
Sbjct: 6 LYQKRFCLFVCLERFQWRGAIFLVCYPLYCVVCFVSVLCRLYCI 49
>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 263
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 319 EHLSFKXEIHNRMSYIFPS 263
E++S+K IHN + +I PS
Sbjct: 234 ENVSYKHWIHNIIGFILPS 252
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = -2
Query: 151 NSHIHTSPYKGNTTYFFSNN 92
N+H + + Y G TT F N+
Sbjct: 499 NTHFYVNLYTGETTMLFPNS 518
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,345,388
Number of Sequences: 5004
Number of extensions: 26315
Number of successful extensions: 67
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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