Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32116
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0072 - 553300-553512,553589-553750,554136-554283,554368-55...    27   3.6  
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365...    27   4.7  
04_03_0852 + 20289439-20289721,20289858-20290642                       26   6.2  
01_01_1054 + 8330081-8330137,8330229-8330321,8330445-8330504,833...    26   6.2  
11_01_0680 - 5554012-5554028,5555525-5555678,5555790-5555951,555...    26   8.3  
01_05_0808 - 25414486-25414677,25415114-25415290,25415839-254159...    26   8.3  

>01_01_0072 -
           553300-553512,553589-553750,554136-554283,554368-554444,
           554525-554595,554854-555184
          Length = 333

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 84  INKHTHTHNSFCHTDILSVNIKL*N*FE 1
           ++ H H H    H DI S NI L N FE
Sbjct: 105 LHHHLHGHPRIIHRDIKSSNILLDNNFE 132


>05_01_0004 -
           34967-35149,35340-35501,36078-36225,36309-36385,
           36507-36577,36850-37263,37518-38268
          Length = 601

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 84  INKHTHTHNSFCHTDILSVNIKL*N*FE 1
           ++ H H H    H DI S NI L N FE
Sbjct: 383 LHYHLHGHPRIIHRDIKSSNILLDNNFE 410


>04_03_0852 + 20289439-20289721,20289858-20290642
          Length = 355

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = +3

Query: 108 YVVFPLYGLVCICEL---ECVSPR 170
           YV  P   LVC+CEL   EC  PR
Sbjct: 84  YVHCPTCKLVCLCELTGTECYDPR 107


>01_01_1054 +
           8330081-8330137,8330229-8330321,8330445-8330504,
           8330703-8330975,8331107-8331181,8331269-8331325,
           8331409-8331549,8331656-8331706,8331795-8331944,
           8331974-8332057,8332171-8332273,8332451-8332527,
           8333469-8333704,8334000-8334078,8335123-8335218,
           8335735-8335828,8336325-8336423,8336663-8337453
          Length = 871

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/65 (26%), Positives = 26/65 (40%)
 Frame = +1

Query: 1   LKLISQFNVHRQNICMTKRIMCVCVFIYLFYC*KKSMLYFLYMDLYVYVSWSACPRVSRP 180
           ++++SQ   H        R +C C            +L + +  L  + SW   P   RP
Sbjct: 539 MEVLSQHVFHPVTCHAMNRTLCTCQVAMQ----SLDVLLYPWNILGGHTSWGNLPPSLRP 594

Query: 181 PPLGG 195
           PP GG
Sbjct: 595 PPEGG 599


>11_01_0680 -
           5554012-5554028,5555525-5555678,5555790-5555951,
           5556130-5557148,5559808-5559835,5560996-5561079,
           5561442-5561654,5562267-5562569
          Length = 659

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 87  ILLLEKKYVVFPLYGLVCI 143
           +LL++  YV F L+G+ CI
Sbjct: 568 LLLIDSFYVAFDLHGITCI 586


>01_05_0808 - 25414486-25414677,25415114-25415290,25415839-25415928,
            25416016-25416081,25416170-25416240,25416375-25416450,
            25416567-25420098,25421464-25421834
          Length = 1524

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +2

Query: 71   VCLFIYFIVRKKVCCISFIWTCMYM*VGVRVPASRALPLSG 193
            +CL    + +  +C + FIW+ M +   V    S   P+ G
Sbjct: 1484 LCLTNLIVTQDFICLLLFIWSSMVLTSAVCAQLSTCFPVFG 1524


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,085,996
Number of Sequences: 37544
Number of extensions: 149664
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)