Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV32114
(324 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyce... 27 0.93
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr... 26 1.2
SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 1.6
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 25 2.1
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 25 2.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 2.8
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 3.7
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p... 25 3.7
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 23 8.6
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 23 8.6
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.6
>SPBC6B1.09c |nbs1||Mre11 complex subunit Nbs1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 26.6 bits (56), Expect = 0.93
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 121 NKLKTNKRNPSDWGHIKGKTKLLFLVFNSEHFHIFLPCKP 2
N LK++ + ++ G +GKTK+ ++ +NS P KP
Sbjct: 410 NSLKSSSKKSANTGSGQGKTKVEYVSYNSVDKGNSSPFKP 449
>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1250
Score = 26.2 bits (55), Expect = 1.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 115 LKTNKRNPSDWGHIKGKTKLLFLVFNSEHFHIFLP 11
LKTNKR H+ K+KL +F SE + P
Sbjct: 238 LKTNKRGLYTLKHVVDKSKLDVRIFRSEAVVVSCP 272
>SPBC1703.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 1.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 41 KYQK*QFRFSFDVSPVGRIPFVCFKFILYKSLDLL 145
KYQK +F F ++ + RI C K + SL LL
Sbjct: 131 KYQKNRFFFMSSINALIRISRNCIKLLFKNSLVLL 165
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 25.4 bits (53), Expect = 2.1
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 55 TISFFL*CVPSR--TDSFCLF*VYFIQKFRSFIYRLRHYEICRIS 183
T+ ++L P+ T + C+F ++F+ R+ RH C +S
Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 115 LKTNKRNPSDWGHIKGKTKL 56
L ++ R S WGH+KG T L
Sbjct: 374 LLSSARGKSIWGHMKGNTLL 393
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 25.0 bits (52), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 111 KQTKGIRPTGDTSKEKRNCYFWYLIPSIFIFFYL 10
+Q I P S KRN W+ I I I ++L
Sbjct: 2125 RQAPSIIPAFYRSLGKRNIVIWFFISQILINYWL 2158
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 24.6 bits (51), Expect = 3.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 62 RFSFDVSPVGRIPFVCFKFILYKSLDLLFI 151
RFS DV V + + F F S+ +LFI
Sbjct: 1006 RFSNDVYKVDEVVSLTFMFFFRNSIQVLFI 1035
>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1028
Score = 24.6 bits (51), Expect = 3.7
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Frame = -1
Query: 231 IESPFFSAHANFYSILADPADFVVP---QSINKRSKLLYK------INLKQTKGIRPTGD 79
I +P+ S H NF +P Q + ++L+ + NLK TKG+R T
Sbjct: 448 ISNPYVSNHLNFNVRRVKSDTVYIPTILQLLRSSTQLMTEQAFVASSNLKSTKGLRETRL 507
Query: 78 TSKEKRNCYFWYLIPSIF 25
K K F Y+ +++
Sbjct: 508 IQKYKVKGDFEYVYAALY 525
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 293 LFISINESTSKTNLVFSGSNL*RALFLVPT 204
+ + +NE L F NL R + LVPT
Sbjct: 647 IILQLNEQGLNAALYFENKNLGRYVSLVPT 676
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 23.4 bits (48), Expect = 8.6
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 64 FFL*CVPSRTDSFCLF 111
FFL VP T SFC+F
Sbjct: 263 FFLNLVPKPTVSFCVF 278
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 23.4 bits (48), Expect = 8.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 249 LQRK*LIESPFFSAHANFYSILA 181
L++ LIE P S+ ++ YSILA
Sbjct: 149 LEKMGLIEKPSESSESSIYSILA 171
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,295
Number of Sequences: 5004
Number of extensions: 23184
Number of successful extensions: 52
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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