Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32114
         (324 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0547 - 17032318-17032392,17032893-17032962,17032979-170331...    27   3.4  
04_03_0987 - 21460169-21460467,21460934-21461495,21462756-214631...    26   7.8  

>04_03_0547 -
           17032318-17032392,17032893-17032962,17032979-17033103,
           17033196-17033252,17034152-17034217
          Length = 130

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 112 KTNKRNPSDWGHIKGKTKLLFLVFNSEHFHIFL 14
           K  +R PS  G I    K+L ++++ +H H F+
Sbjct: 89  KDPERKPSLGGDISLPAKILLMLYDQDHTHSFM 121


>04_03_0987 -
           21460169-21460467,21460934-21461495,21462756-21463190,
           21463757-21464185
          Length = 574

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 213 SAHANFYSILADPADFVVPQSINKRSKL 130
           S+HA+  +  ADP DF + + +N R ++
Sbjct: 10  SSHASMAAAAADPDDFDLTRMLNHRPRI 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,271,264
Number of Sequences: 37544
Number of extensions: 117974
Number of successful extensions: 216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)