Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32114
         (324 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm rece...    28   1.8  
Z49068-7|CAA88859.1|  552|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical pr...    26   5.4  
AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical...    26   5.4  
Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or ad...    26   7.2  
AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm rece...    26   7.2  

>AF022971-2|AAG23980.1|  327|Caenorhabditis elegans Seven tm
           receptor protein 46 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 39  LNTKNNNFVFPLMCPQSDGFLLFVLSLFYTKV*IFYLSI 155
           LNT+N+ F+  +      GF LF+L+ F  +    Y+S+
Sbjct: 78  LNTQNSLFLVQISVAVYAGFYLFILAFFVVQFVFRYVSL 116


>Z49068-7|CAA88859.1|  552|Caenorhabditis elegans Hypothetical
           protein K01C8.8 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 228 ESPFFSAHANFYSILADPADFVVPQSINKRSKLLY 124
           E  FFS + NFY +  +P + VV  + N R K+ Y
Sbjct: 427 EIRFFSDNGNFYEVKMNPLEEVVMTTCNYR-KIKY 460


>Z48621-7|CAA88546.1|  770|Caenorhabditis elegans Hypothetical
           protein R07B1.9 protein.
          Length = 770

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 320 SQFIVFVICLFISINESTSKTNLVF 246
           ++FI+ V+CL IS+ +  +  NL++
Sbjct: 412 TKFILSVVCLGISVEKMCASANLIY 436


>AL132898-10|CAC14416.2|  346|Caenorhabditis elegans Hypothetical
           protein Y59A8B.21 protein.
          Length = 346

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 27  KCSELNTKNNNFVFPLMCPQSDGFLLFVLSLFYTK 131
           KC     K NN+ + ++   + G LL  +S FY K
Sbjct: 277 KCFGNRHKANNYGYLILSTTTSGILLAAISQFYLK 311


>Z81137-2|CAB03465.1|  386|Caenorhabditis elegans Hypothetical
           protein W02D9.3 protein.
          Length = 386

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 183 ADPADFVVPQSINKRSKLLYKINLKQTKGIRPTGDTSKEKRN 58
           +D  +  +P+   KR+K++YK   ++ K   P  D +  KRN
Sbjct: 89  SDEEEKKLPKITEKRAKMVYKKKPEKEKEAVPFIDPNAPKRN 130


>AF016671-5|AAB66112.2| 1251|Caenorhabditis elegans Adaptin or
           adaptin-related proteinprotein 5, isoform a protein.
          Length = 1251

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = -1

Query: 132 LLYKINLKQTKGIRPTGDTSKEK 64
           LLYKI LK    +RPT    KEK
Sbjct: 169 LLYKIFLKYPDALRPTFPRLKEK 191


>AF016422-1|AAG24175.1|  335|Caenorhabditis elegans Seven tm
           receptor protein 238 protein.
          Length = 335

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 75  SKEKRNCYFWYLIPSIFIFFYLVNL 1
           +K  R    W LIP I+ F + VNL
Sbjct: 122 TKSLRKTLIWLLIPVIYGFLWAVNL 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,983,435
Number of Sequences: 27780
Number of extensions: 123629
Number of successful extensions: 329
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)