Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32110
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha...    27   1.5  
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   6.2  
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    25   8.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    25   8.3  

>SPBC776.09 |ste13||ATP-dependent RNA helicase
           Ste13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 344 EIPRSMQCSSGQVLALHYTRRQGGGHNAQKLGNG 445
           +IPR +  S+ QVLA    + Q G HN      G
Sbjct: 424 QIPRPLTASADQVLAAQQAKGQEGYHNRPNNNRG 457


>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 29  RAVQRNFLRRLKILHLVFML*TRCDGSLYNTEMWTVYKPWSCRKMDN 169
           R +  NF +  K +   F      D  +Y    W   KPWS R +DN
Sbjct: 287 RFIPGNFTKLEKSIIGAFAALVFKDIFVYGFIAWRKRKPWSIRILDN 333


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 250 TPIDLYFRSLFYIIILNIDLEKSWSQAPHCSR 345
           T  DL+F SL  I   +I  EK+  + PH +R
Sbjct: 161 TLADLFFGSLLRIFFNSIIDEKTRKELPHLTR 192


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +2

Query: 173 SWTAPSR*PVLLV*IENV 226
           SWTA ++ P+L + IEN+
Sbjct: 148 SWTAETKAPILAIDIENI 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,222,730
Number of Sequences: 5004
Number of extensions: 44076
Number of successful extensions: 115
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)