Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32106
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch...    42   5e-05
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    35   0.006
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   5.0  
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy...    25   6.6  

>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 41.9 bits (94), Expect = 5e-05
 Identities = 18/30 (60%), Positives = 20/30 (66%)
 Frame = -2

Query: 493 KLNHSLNDQQINWFKAGSALNRMKEIASGK 404
           KLNH+ N  QI WFKAGSALN M  +   K
Sbjct: 749 KLNHTFNKDQIEWFKAGSALNHMANMHKQK 778


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 35.1 bits (77), Expect = 0.006
 Identities = 16/32 (50%), Positives = 22/32 (68%)
 Frame = -2

Query: 508 STVRIKLNHSLNDQQINWFKAGSALNRMKEIA 413
           S V I   H+++  QI +FKAGSALN ++E A
Sbjct: 755 SVVEIPCKHTMSKDQIEFFKAGSALNLIREKA 786


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 123 DEFSVSCNIFMNVLLKSS*MDFIYVNKLPY 34
           ++   SCN+F  ++LK + +   Y+  +PY
Sbjct: 306 EKLGTSCNLFFVLVLKLALLSSSYIGFVPY 335


>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -1

Query: 497 HQAQPFVERPTDQLVQGRLGAQQNEGNRF 411
           H A PF +   D++++  +G + NEGN F
Sbjct: 6   HNA-PFDKTKFDEVLEALVGLKDNEGNPF 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,837,454
Number of Sequences: 5004
Number of extensions: 32725
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)