Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32105
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    36   0.008
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    29   0.67 
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    27   2.1  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   2.7  
SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces ...    26   4.7  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   8.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   8.3  

>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 35.5 bits (78), Expect = 0.008
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 190 NQDGSVTWREWAPGAHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPDGSCALKHDS 369
           NQ+     RE   G  +LHL  E   W  K+ P+ K+ + ++  +   +P+ S +L +DS
Sbjct: 46  NQEAYNWLREQIRGLRNLHLLPEEEQWLRKNCPYLKESFYEFMHEFEFDPENSISLNYDS 105

Query: 370 RVQ 378
             +
Sbjct: 106 ETK 108


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 502 KVDKPKSLRIYECHVGIATSEGKVGSYNE 588
           ++    S+ +YE H  IA  +G VG YN+
Sbjct: 196 RIQNEFSVLVYEIHARIALEKGDVGEYNQ 224


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 678 RSVICMFLYGHDLYSIVTLFLDSGQDVLAEL-VVRAH 571
           + ++ M  YGH   S+   +LD G DV   + + RAH
Sbjct: 124 KKIVAMDPYGHLTPSVFKKYLDEGYDVRPTIAITRAH 160


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
           transporting Cta4 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 394 NLYRISPWASYVKPHEGFTYQHFIYKPEQPY 486
           +LY + P+A +V P+ G+ YQ+ +Y  E  Y
Sbjct: 26  HLY-VWPFALFVYPYIGYVYQNKLYSEEVRY 55


>SPAC24B11.05 |||pyrimidine 5'-nucleotidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 31  LEKLLERDGYLKPYEREIRRRYACY 105
           LEK++++D  L+    E+R++Y C+
Sbjct: 85  LEKVIKKDEVLREMLLELRKKYKCW 109


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 400 YRISPWASYVKPHEGFTYQ 456
           Y +  W  Y+K HEG T +
Sbjct: 30  YSLKSWLRYIKTHEGSTLE 48


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 232 AHSLHLRGEFNGWDSKSHPFAKKEYGKWEIQIPANPD 342
           A  LH     N WD +S    +  +GK   +IP N D
Sbjct: 85  AEDLHYGRYINDWDIQSEVLKESSFGK--EKIPVNED 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,242
Number of Sequences: 5004
Number of extensions: 78871
Number of successful extensions: 219
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)