Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32103
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa...    68   2e-12
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    32   0.10 
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa...    31   0.13 
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    30   0.41 
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    29   0.95 
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    27   2.9  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    26   5.0  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   5.0  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    26   6.7  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    25   8.8  

>SPCC4B3.12 |set9||histone lysine methyltransferase
           Set9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 441

 Score = 67.7 bits (158), Expect = 2e-12
 Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 5/203 (2%)
 Frame = +1

Query: 163 SEYDDLATALIVDP-YLGITTHKMN-IRYRPLKTNKE-ELKNIIKEFIHTQ-DYNKAYSK 330
           S +DD+ T L+VD  +     HK+  +  R ++  +   + NII ++I  Q D ++A   
Sbjct: 12  SLFDDVCTCLLVDKVFYWSQIHKVRKLVDRSIERMESCSIINIITKYIIEQTDLDQAAKN 71

Query: 331 LAN-GEWIPRHFSKNKHQQTKFRDHIYRYLRIFDKKAGFVIEPCYRYSLEGRVGAKISST 507
           +    E  P     +      F  H+  YL ++     F I    +Y    +  A + + 
Sbjct: 72  ILQFRELDPLLRRLSSTSLLAFTRHLKYYLSLYLPSCKFEICSTNQYFSSSKPEACVIAR 131

Query: 508 KKFFKHERIDFLVGCIAEMTEEEEKQLLHPGKNDFSVMYSCRKNCAQLWLGPAAYINHDC 687
           +     E I  L G I +++ +EE+ +   GK DFS+++S R +   L+LGPA ++NHDC
Sbjct: 132 ESINAGEDITDLCGTIIKLSPKEERNI-GIGK-DFSILHSSRLDSMCLFLGPARFVNHDC 189

Query: 688 RPTCTFEATDRGKAFVRVLRDIE 756
              C F  + + + ++R +RDI+
Sbjct: 190 NANCRFNTSGK-RIWLRCVRDIK 211


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
 Frame = +1

Query: 322 YSKLANGEWIPRHFSKNKHQQTKFRDHIYRYLRI-FDKKAGFVIEPCYRYSLEGRVGAK- 495
           +S L N EW+  +FS  +    +  D++   LR    +    V++   RYS    VGA+ 
Sbjct: 639 HSNLLNPEWLMNYFS--RFSPDEVYDYLREMLRSNLRQNLQIVVQIATRYS--DLVGAQR 694

Query: 496 -ISSTKKFFKHERIDFLVGCIAEMTEEEE 579
            I   +KF   E + + +G I  +TE+ E
Sbjct: 695 IIEMFEKFKTFEGLYYYLGSIVNITEDPE 723


>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
           Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 875

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -2

Query: 611 KSFFPGCNNCFSSSSVISAMHPTKKSILSCLKNF-FVDEI 495
           K  F   N+ FS SS+ S +    K+++ CLKNF  V+E+
Sbjct: 650 KQDFDNSNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEEL 689


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +1

Query: 358 HFSKNKHQQTKFRDHIYRYLRIFDKKA 438
           H  ++ + +T FR  +Y+YL+I DKK+
Sbjct: 872 HDEEHHYYKTGFRKRVYKYLKIKDKKS 898


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -3

Query: 706 QMYMLVYNHD*YKQQVQAITEHNFFYSYT*LRSHFFQDVII 584
           Q+  LV N+  Y+Q+  A+ + N  Y Y+ L  H FQD ++
Sbjct: 88  QVKPLVENNRLYQQRADALAQENLSYVYSPL-FHSFQDWVV 127


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
 Frame = +1

Query: 499 SSTKKFFKHERIDFLVGCIA-EMT---EEEEKQLLHPGKNDFSVMYSCRKNCAQLWLGPA 666
           SS+++F K E   +     A E T   EE+EK    P  +   V ++C  NC+Q W    
Sbjct: 151 SSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDKVPRVD--KVCFTCGVNCSQTWYHNL 208

Query: 667 AYINHDCRPTC 699
               +D  P C
Sbjct: 209 KNKKYDICPNC 219


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 699 TCWSTIMINISSRSKP*LSTIFSTAIH 619
           TC+ST++  + +R KP L  I ST ++
Sbjct: 796 TCFSTVVNALGTRCKPYLPQIVSTILY 822


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 16/53 (30%), Positives = 28/53 (52%)
 Frame = -2

Query: 296 INSFIMFFNSSLFVFKGL*RIFILCVVMPRYGSTIRAVARSSYSDSSRGVIPI 138
           I SF+ ++    F+FKGL    +LC + P+     R V +    +S  G++P+
Sbjct: 339 IGSFVFYWFPG-FIFKGLSYFTVLCWIWPKN----RVVNQLFGYNSGLGILPL 386


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
 Frame = -2

Query: 638 FFLQLY-----ITEKSFFPGC----NNCFSSSSVISAMHPT-KKSILSCLKNFFVDEI 495
           FFL LY     + E S F G     NN     SVI        K    CL  FFVD+I
Sbjct: 480 FFLTLYQSFTEVDENSIFNGVFETLNNDVDDESVIGEKEKLILKQKQKCLSEFFVDDI 537


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 85  VVGSASYPVRQVLHKMQPMGMTP 153
           VVG ASY  ++ LHK+   G  P
Sbjct: 549 VVGRASYVAKEELHKLDSEGGLP 571


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,106,364
Number of Sequences: 5004
Number of extensions: 65014
Number of successful extensions: 189
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)