Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV32103
         (756 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0613 + 5060150-5060320,5062255-5062359,5064057-5064143,506...    29   3.0  
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658...    29   4.0  
04_04_0754 + 27803143-27803517,27805441-27806832,27806910-278071...    29   5.3  
12_02_0874 + 23915303-23915543,23915630-23915713,23915797-239163...    28   7.0  
07_01_1025 + 8861153-8861376,8861929-8863027                           28   7.0  
04_01_0196 + 2287911-2288278,2289187-2289838                           28   9.2  

>12_01_0613 +
           5060150-5060320,5062255-5062359,5064057-5064143,
           5064265-5064318,5064402-5064547,5064651-5064804,
           5064891-5065028,5065454-5065527,5065615-5065756,
           5066396-5066474,5067326-5067423
          Length = 415

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 311 IIKLIQN*PMVNGYLDILVKINISRPSFETI 403
           I+  + N P ++GYLD+LV + +S  S E +
Sbjct: 298 ILSKLMNSPDIDGYLDVLVHMEMSLHSMEVV 328


>02_04_0281 +
           21563588-21563696,21565053-21565708,21565793-21565879,
           21566487-21567461,21567640-21567786
          Length = 657

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 114 ASAPQDAADGYDSSRAVRIR*SSNGSNRGPISRHHDTQDEYP 239
           +SAP D+ DGY  S++     SS+     P    H  +D  P
Sbjct: 539 SSAPADSDDGYKRSQSGSEEASSSSETTEPGDEEHPAEDSLP 580


>04_04_0754 + 27803143-27803517,27805441-27806832,27806910-27807164,
            27807246-27807368,27807643-27808119,27808217-27808603
          Length = 1002

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
 Frame = +1

Query: 244  RPLKTNKEELKN-IIKEFIHTQDYNKAYSKLANGEWIPRHFSKNKHQQTKFRDHIYRYLR 420
            +P+  N   LKN +++EF       +  S+   G+ +  H +K  H +     H++   R
Sbjct: 690  KPVVVNTRLLKNMVLREFYAYVAAAEVNSEHPLGKAVVEH-AKKFHSE---ESHVWTEAR 745

Query: 421  IFDKKAGFVIEPCYRYSLEGRVGAKISSTKKFFKHERIDFLVGCIAEMTEEEEK 582
             F    G  ++      + GR  A +   K F     ID  V  +  +TEEEEK
Sbjct: 746  DFISVTGHGVKA----KISGR--AVMVGNKSFMLTSGIDIPVEALEILTEEEEK 793


>12_02_0874 +
           23915303-23915543,23915630-23915713,23915797-23916312,
           23916426-23916482,23916630-23916802,23916886-23917014,
           23917102-23917296,23917381-23917503,23918171-23918284
          Length = 543

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = +1

Query: 430 KKAGFVIEPCYRYSLEGRVGAKISSTKKFFKHERIDFLVGCIAEMTEEEEKQLLHPGKND 609
           KK+G V     R S +G    +I S++++  H R   LV     +T  ++K+L  PG + 
Sbjct: 258 KKSGVVRLSFKRKSFDGEQTTEICSSRRYLIHPRAGLLVP--QGITCRDKKKLPAPGSSP 315

Query: 610 FS 615
           ++
Sbjct: 316 YT 317


>07_01_1025 + 8861153-8861376,8861929-8863027
          Length = 440

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 421 FVNNDKYGLETWSADVYFY*NVEVSIHHWLVLNKLYYN 308
           +V+ D+ G E WSAD        ++  HWL+   +YYN
Sbjct: 229 YVHLDEPG-ERWSADAATIDVAVLAAGHWLMNGAIYYN 265


>04_01_0196 + 2287911-2288278,2289187-2289838
          Length = 339

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 583 QLLHPGKNDFSVMYSCRKNCAQLWLGPAAYINHDCRP 693
           + LH  K +    +S R N A+      +Y++HDC+P
Sbjct: 107 EYLHVSKEEAVQSWSMRYNIAKGIGSALSYLHHDCKP 143


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,436,110
Number of Sequences: 37544
Number of extensions: 363028
Number of successful extensions: 915
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)